miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18804 3' -54.5 NC_004683.1 + 5233 0.66 0.79809
Target:  5'- gUCAgUGCCuGGCGACgUcgUCGCcgGCg -3'
miRNA:   3'- -GGUgACGGuCUGCUGgAcaAGCGa-CG- -5'
18804 3' -54.5 NC_004683.1 + 1464 0.66 0.79809
Target:  5'- gUCACaGCCAGGCccgcGCCUggcGUUCGgUGUg -3'
miRNA:   3'- -GGUGaCGGUCUGc---UGGA---CAAGCgACG- -5'
18804 3' -54.5 NC_004683.1 + 53299 0.66 0.782446
Target:  5'- aCGCgGUCAGgaacucgucgugcucACGGCgUGcgCGCUGCa -3'
miRNA:   3'- gGUGaCGGUC---------------UGCUGgACaaGCGACG- -5'
18804 3' -54.5 NC_004683.1 + 12802 0.66 0.778471
Target:  5'- gCCGCUGgcggauacCCGGGCGAUgcgg-CGCUGCu -3'
miRNA:   3'- -GGUGAC--------GGUCUGCUGgacaaGCGACG- -5'
18804 3' -54.5 NC_004683.1 + 25345 0.66 0.778471
Target:  5'- gCGCgGCCAGcaguGCGACCa----GCUGCg -3'
miRNA:   3'- gGUGaCGGUC----UGCUGGacaagCGACG- -5'
18804 3' -54.5 NC_004683.1 + 37166 0.66 0.778471
Target:  5'- aCGCcGCCGagcaucGAUGACCUGggcaUCGCcGCc -3'
miRNA:   3'- gGUGaCGGU------CUGCUGGACa---AGCGaCG- -5'
18804 3' -54.5 NC_004683.1 + 17973 0.66 0.76843
Target:  5'- gCGCUGUguGGCguuGAgCUGaacgCGCUGCg -3'
miRNA:   3'- gGUGACGguCUG---CUgGACaa--GCGACG- -5'
18804 3' -54.5 NC_004683.1 + 45256 0.66 0.76843
Target:  5'- ----cGCCGaACGACCgGgcaacgUCGCUGCg -3'
miRNA:   3'- ggugaCGGUcUGCUGGaCa-----AGCGACG- -5'
18804 3' -54.5 NC_004683.1 + 105 0.66 0.76843
Target:  5'- aCCGCagGCCAGguucugcggcGCGACCUGcagaaaGCgGCa -3'
miRNA:   3'- -GGUGa-CGGUC----------UGCUGGACaag---CGaCG- -5'
18804 3' -54.5 NC_004683.1 + 46922 0.66 0.76843
Target:  5'- gCGCUGCC-GACGugCacgacgGUggagcggcacgCGCUGCu -3'
miRNA:   3'- gGUGACGGuCUGCugGa-----CAa----------GCGACG- -5'
18804 3' -54.5 NC_004683.1 + 17244 0.66 0.747939
Target:  5'- cCCA-UGUCGGAgCGGCgCUGguagUGCUGCa -3'
miRNA:   3'- -GGUgACGGUCU-GCUG-GACaa--GCGACG- -5'
18804 3' -54.5 NC_004683.1 + 26543 0.66 0.747939
Target:  5'- -gGCUcGgCGGGCGGCCUGgaUCGCggugUGCa -3'
miRNA:   3'- ggUGA-CgGUCUGCUGGACa-AGCG----ACG- -5'
18804 3' -54.5 NC_004683.1 + 27515 0.66 0.747939
Target:  5'- uUCAC-GCCGGuCGAcCCUGUcgUgGUUGCg -3'
miRNA:   3'- -GGUGaCGGUCuGCU-GGACA--AgCGACG- -5'
18804 3' -54.5 NC_004683.1 + 56451 0.66 0.747939
Target:  5'- gCACUGUC-GAUGGCCUuggUGCUGUc -3'
miRNA:   3'- gGUGACGGuCUGCUGGAcaaGCGACG- -5'
18804 3' -54.5 NC_004683.1 + 41949 0.67 0.737513
Target:  5'- cCCucggcCUGCCAguGACGACC-GUUgCGCcGCu -3'
miRNA:   3'- -GGu----GACGGU--CUGCUGGaCAA-GCGaCG- -5'
18804 3' -54.5 NC_004683.1 + 39439 0.67 0.737513
Target:  5'- cCCAUccgGCCuuuGCGGCCUG--CGCUGUg -3'
miRNA:   3'- -GGUGa--CGGuc-UGCUGGACaaGCGACG- -5'
18804 3' -54.5 NC_004683.1 + 46050 0.67 0.72698
Target:  5'- gCCACgaUGUgGGACGugCcccgGUUCGCcgagGCg -3'
miRNA:   3'- -GGUG--ACGgUCUGCugGa---CAAGCGa---CG- -5'
18804 3' -54.5 NC_004683.1 + 21052 0.67 0.72698
Target:  5'- aCCAggGCauCAGAUGACCgUGUagccCGCUGCc -3'
miRNA:   3'- -GGUgaCG--GUCUGCUGG-ACAa---GCGACG- -5'
18804 3' -54.5 NC_004683.1 + 47264 0.67 0.72698
Target:  5'- aCCGCguugccgGCCuGGCGcACCUGcUCGCgucgGUu -3'
miRNA:   3'- -GGUGa------CGGuCUGC-UGGACaAGCGa---CG- -5'
18804 3' -54.5 NC_004683.1 + 13716 0.67 0.716354
Target:  5'- uCCGgUuucGCCGGugcGCGGCCUG--CGCUGCc -3'
miRNA:   3'- -GGUgA---CGGUC---UGCUGGACaaGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.