miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18804 3' -54.5 NC_004683.1 + 8661 0.77 0.21647
Target:  5'- -aGCUGCgC-GACGACCUGUUCGCUcacaaGCu -3'
miRNA:   3'- ggUGACG-GuCUGCUGGACAAGCGA-----CG- -5'
18804 3' -54.5 NC_004683.1 + 5233 0.66 0.79809
Target:  5'- gUCAgUGCCuGGCGACgUcgUCGCcgGCg -3'
miRNA:   3'- -GGUgACGGuCUGCUGgAcaAGCGa-CG- -5'
18804 3' -54.5 NC_004683.1 + 1464 0.66 0.79809
Target:  5'- gUCACaGCCAGGCccgcGCCUggcGUUCGgUGUg -3'
miRNA:   3'- -GGUGaCGGUCUGc---UGGA---CAAGCgACG- -5'
18804 3' -54.5 NC_004683.1 + 12802 0.66 0.778471
Target:  5'- gCCGCUGgcggauacCCGGGCGAUgcgg-CGCUGCu -3'
miRNA:   3'- -GGUGAC--------GGUCUGCUGgacaaGCGACG- -5'
18804 3' -54.5 NC_004683.1 + 105 0.66 0.76843
Target:  5'- aCCGCagGCCAGguucugcggcGCGACCUGcagaaaGCgGCa -3'
miRNA:   3'- -GGUGa-CGGUC----------UGCUGGACaag---CGaCG- -5'
18804 3' -54.5 NC_004683.1 + 46922 0.66 0.76843
Target:  5'- gCGCUGCC-GACGugCacgacgGUggagcggcacgCGCUGCu -3'
miRNA:   3'- gGUGACGGuCUGCugGa-----CAa----------GCGACG- -5'
18804 3' -54.5 NC_004683.1 + 27515 0.66 0.747939
Target:  5'- uUCAC-GCCGGuCGAcCCUGUcgUgGUUGCg -3'
miRNA:   3'- -GGUGaCGGUCuGCU-GGACA--AgCGACG- -5'
18804 3' -54.5 NC_004683.1 + 46050 0.67 0.72698
Target:  5'- gCCACgaUGUgGGACGugCcccgGUUCGCcgagGCg -3'
miRNA:   3'- -GGUG--ACGgUCUGCugGa---CAAGCGa---CG- -5'
18804 3' -54.5 NC_004683.1 + 13716 0.67 0.716354
Target:  5'- uCCGgUuucGCCGGugcGCGGCCUG--CGCUGCc -3'
miRNA:   3'- -GGUgA---CGGUC---UGCUGGACaaGCGACG- -5'
18804 3' -54.5 NC_004683.1 + 3243 0.67 0.716354
Target:  5'- -gACUGUCcGAgGGCCUGgcCGCgGCg -3'
miRNA:   3'- ggUGACGGuCUgCUGGACaaGCGaCG- -5'
18804 3' -54.5 NC_004683.1 + 2193 0.67 0.712079
Target:  5'- aCUACUgGCCGcGACcGCCUGUgccgcgugccgugUGCUGCu -3'
miRNA:   3'- -GGUGA-CGGU-CUGcUGGACAa------------GCGACG- -5'
18804 3' -54.5 NC_004683.1 + 18467 0.73 0.381464
Target:  5'- cCCGCUccccgaauggaugcGgCAGACGccgaACCUGgagUCGCUGCa -3'
miRNA:   3'- -GGUGA--------------CgGUCUGC----UGGACa--AGCGACG- -5'
18804 3' -54.5 NC_004683.1 + 49270 0.71 0.5002
Target:  5'- aCGCUGCCcGACGACg---UCGCgGCa -3'
miRNA:   3'- gGUGACGGuCUGCUGgacaAGCGaCG- -5'
18804 3' -54.5 NC_004683.1 + 6370 0.7 0.531645
Target:  5'- cCCGCguggugcGCCccGGCGACCUGUUCGaCgacaGCg -3'
miRNA:   3'- -GGUGa------CGGu-CUGCUGGACAAGC-Ga---CG- -5'
18804 3' -54.5 NC_004683.1 + 55676 0.69 0.585482
Target:  5'- aCCAC-GCaCAG-CGACC-GUcCGCUGCu -3'
miRNA:   3'- -GGUGaCG-GUCuGCUGGaCAaGCGACG- -5'
18804 3' -54.5 NC_004683.1 + 25536 0.68 0.62929
Target:  5'- gCCGCUGUgGcuCGGCCUGgUCGCcGCc -3'
miRNA:   3'- -GGUGACGgUcuGCUGGACaAGCGaCG- -5'
18804 3' -54.5 NC_004683.1 + 6737 0.68 0.640272
Target:  5'- uCgACgGcCCGGGCGGCCgcgugcugUCGCUGCc -3'
miRNA:   3'- -GgUGaC-GGUCUGCUGGaca-----AGCGACG- -5'
18804 3' -54.5 NC_004683.1 + 18558 0.68 0.673132
Target:  5'- gCCAucagcCUGCCgacaccGGGCGACCUGc-UGCUGUu -3'
miRNA:   3'- -GGU-----GACGG------UCUGCUGGACaaGCGACG- -5'
18804 3' -54.5 NC_004683.1 + 53299 0.66 0.782446
Target:  5'- aCGCgGUCAGgaacucgucgugcucACGGCgUGcgCGCUGCa -3'
miRNA:   3'- gGUGaCGGUC---------------UGCUGgACaaGCGACG- -5'
18804 3' -54.5 NC_004683.1 + 39526 0.72 0.420855
Target:  5'- uCCACUuCCAGGCGAgguCCUGgcCGCgaggGCg -3'
miRNA:   3'- -GGUGAcGGUCUGCU---GGACaaGCGa---CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.