miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18804 5' -55.7 NC_004683.1 + 28817 0.66 0.716354
Target:  5'- aCCGCGucAGGggugauguUCgAGGUcGCCGACgAGCa -3'
miRNA:   3'- -GGCGU--UCU--------AGgUCCGaCGGCUGgUUG- -5'
18804 5' -55.7 NC_004683.1 + 41045 0.66 0.716354
Target:  5'- gCGCGcGG-CCAGGUcggcgugGCCGACgGGCa -3'
miRNA:   3'- gGCGUuCUaGGUCCGa------CGGCUGgUUG- -5'
18804 5' -55.7 NC_004683.1 + 23680 0.66 0.716354
Target:  5'- gCGCAAGAUCC--GC-GCCGACgGGu -3'
miRNA:   3'- gGCGUUCUAGGucCGaCGGCUGgUUg -5'
18804 5' -55.7 NC_004683.1 + 47295 0.66 0.715286
Target:  5'- aCCGaCGAGGUCUcgcgcggccggugGGGUgaccgcguUGCCGGCCuGGCg -3'
miRNA:   3'- -GGC-GUUCUAGG-------------UCCG--------ACGGCUGG-UUG- -5'
18804 5' -55.7 NC_004683.1 + 15040 0.66 0.705644
Target:  5'- aCCGCGgcaucGGGUUC-GGCaUGCaGGCCGGCa -3'
miRNA:   3'- -GGCGU-----UCUAGGuCCG-ACGgCUGGUUG- -5'
18804 5' -55.7 NC_004683.1 + 46274 0.66 0.705644
Target:  5'- gCGCAGGGgcaaCCAGcGUcccgaUGuuGACCGGCu -3'
miRNA:   3'- gGCGUUCUa---GGUC-CG-----ACggCUGGUUG- -5'
18804 5' -55.7 NC_004683.1 + 19178 0.66 0.705644
Target:  5'- gCGCAucccagcgggguAGAUCCAGGCgcGCCG-UCggUg -3'
miRNA:   3'- gGCGU------------UCUAGGUCCGa-CGGCuGGuuG- -5'
18804 5' -55.7 NC_004683.1 + 24646 0.66 0.705644
Target:  5'- gCCGCc-GA-UgGGGUaGCCGACCGGCu -3'
miRNA:   3'- -GGCGuuCUaGgUCCGaCGGCUGGUUG- -5'
18804 5' -55.7 NC_004683.1 + 39943 0.66 0.694864
Target:  5'- gCGguGGGUgCAGGUUGgCGcucGCCGGCu -3'
miRNA:   3'- gGCguUCUAgGUCCGACgGC---UGGUUG- -5'
18804 5' -55.7 NC_004683.1 + 24427 0.66 0.694864
Target:  5'- aCgGCGGGA-CCAaGCcGCCGGCCAc- -3'
miRNA:   3'- -GgCGUUCUaGGUcCGaCGGCUGGUug -5'
18804 5' -55.7 NC_004683.1 + 6631 0.66 0.693782
Target:  5'- gCCGacaacacCGAGGcUCAGGCUGCC-AUCGACg -3'
miRNA:   3'- -GGC-------GUUCUaGGUCCGACGGcUGGUUG- -5'
18804 5' -55.7 NC_004683.1 + 31502 0.66 0.684023
Target:  5'- cUCGCcuGGGA-CCAGGCguagGCCGACa--- -3'
miRNA:   3'- -GGCG--UUCUaGGUCCGa---CGGCUGguug -5'
18804 5' -55.7 NC_004683.1 + 25945 0.66 0.684023
Target:  5'- cCUGCAGcgcuaCGGGCUGuCCGACgGGCu -3'
miRNA:   3'- -GGCGUUcuag-GUCCGAC-GGCUGgUUG- -5'
18804 5' -55.7 NC_004683.1 + 43396 0.66 0.673132
Target:  5'- gCCGCAAccgccaggcGAUCC-GGCUcuacGCCGACUg-- -3'
miRNA:   3'- -GGCGUU---------CUAGGuCCGA----CGGCUGGuug -5'
18804 5' -55.7 NC_004683.1 + 2381 0.66 0.673132
Target:  5'- cCCGC-GGAUCCAGcagacaCUgGCCGGCCcgucGACg -3'
miRNA:   3'- -GGCGuUCUAGGUCc-----GA-CGGCUGG----UUG- -5'
18804 5' -55.7 NC_004683.1 + 2577 0.66 0.673132
Target:  5'- aCCGaCGAGAacaCCAa-CUGCCGcACCAGCa -3'
miRNA:   3'- -GGC-GUUCUa--GGUccGACGGC-UGGUUG- -5'
18804 5' -55.7 NC_004683.1 + 19957 0.66 0.670949
Target:  5'- uCUGCcGGAucucagccaccguUCCGGuGCUGCCGcuggcugaaccgcGCCAACc -3'
miRNA:   3'- -GGCGuUCU-------------AGGUC-CGACGGC-------------UGGUUG- -5'
18804 5' -55.7 NC_004683.1 + 26482 0.66 0.662203
Target:  5'- aCCaGCGGGAUCaGGGCggugaccgcGUCGAUCAGCc -3'
miRNA:   3'- -GG-CGUUCUAGgUCCGa--------CGGCUGGUUG- -5'
18804 5' -55.7 NC_004683.1 + 35091 0.66 0.658918
Target:  5'- aCCGCgAAGAUCCAGauaacuaccgugacGCUGaCCcaaguCCAACg -3'
miRNA:   3'- -GGCG-UUCUAGGUC--------------CGAC-GGcu---GGUUG- -5'
18804 5' -55.7 NC_004683.1 + 8947 0.67 0.651246
Target:  5'- uCCGCugguGGAgcugCCcGGCgagGCCGACgGAUu -3'
miRNA:   3'- -GGCGu---UCUa---GGuCCGa--CGGCUGgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.