miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18804 5' -55.7 NC_004683.1 + 24134 0.68 0.574605
Target:  5'- gCgGCAAGuacgucGUCgAGGCgaucGCCGACCuGCa -3'
miRNA:   3'- -GgCGUUC------UAGgUCCGa---CGGCUGGuUG- -5'
18804 5' -55.7 NC_004683.1 + 10428 0.7 0.449748
Target:  5'- gCGCGGGAUgccgaCCAGGCcgucaagaagguUGCCGAUCGGg -3'
miRNA:   3'- gGCGUUCUA-----GGUCCG------------ACGGCUGGUUg -5'
18804 5' -55.7 NC_004683.1 + 43807 0.7 0.449748
Target:  5'- aCGCAAGAgucauuugCCGGugcGCUGCUGACCu-- -3'
miRNA:   3'- gGCGUUCUa-------GGUC---CGACGGCUGGuug -5'
18804 5' -55.7 NC_004683.1 + 48365 0.7 0.469605
Target:  5'- gCUGCucGAcacUCC-GGCUGCCGugCGAUu -3'
miRNA:   3'- -GGCGuuCU---AGGuCCGACGGCugGUUG- -5'
18804 5' -55.7 NC_004683.1 + 47285 0.69 0.5002
Target:  5'- uUGCAuucGAUCuCAcGCUGCCGAgCCAGCc -3'
miRNA:   3'- gGCGUu--CUAG-GUcCGACGGCU-GGUUG- -5'
18804 5' -55.7 NC_004683.1 + 44509 0.69 0.510594
Target:  5'- uCgGCGAGAUCCAGaagGCCGAaaaguaCAACg -3'
miRNA:   3'- -GgCGUUCUAGGUCcgaCGGCUg-----GUUG- -5'
18804 5' -55.7 NC_004683.1 + 44330 0.69 0.531645
Target:  5'- gUCGCAGGcgCUcGcGCUGCCGucgaccgucaaGCCGACg -3'
miRNA:   3'- -GGCGUUCuaGGuC-CGACGGC-----------UGGUUG- -5'
18804 5' -55.7 NC_004683.1 + 12237 0.68 0.553
Target:  5'- -gGCGGGAgcgCCcGGCgUGCCGAugcCCGGCg -3'
miRNA:   3'- ggCGUUCUa--GGuCCG-ACGGCU---GGUUG- -5'
18804 5' -55.7 NC_004683.1 + 1373 0.68 0.563775
Target:  5'- gCCGCGAGcgCCucGGCUGgCaCGacaaGCCGGCg -3'
miRNA:   3'- -GGCGUUCuaGGu-CCGAC-G-GC----UGGUUG- -5'
18804 5' -55.7 NC_004683.1 + 2939 0.7 0.439994
Target:  5'- gCGCGAGAUUCG---UGCCGACCAGg -3'
miRNA:   3'- gGCGUUCUAGGUccgACGGCUGGUUg -5'
18804 5' -55.7 NC_004683.1 + 41620 0.7 0.439994
Target:  5'- -aGCcGGAUCCGGGC-GCgCGGCgAACa -3'
miRNA:   3'- ggCGuUCUAGGUCCGaCG-GCUGgUUG- -5'
18804 5' -55.7 NC_004683.1 + 13464 0.7 0.430362
Target:  5'- gCGCAGGGuggcggcggcuUCCAGGgcgugucgggcCUGCCGAUgGACg -3'
miRNA:   3'- gGCGUUCU-----------AGGUCC-----------GACGGCUGgUUG- -5'
18804 5' -55.7 NC_004683.1 + 12816 0.75 0.228142
Target:  5'- cCCGgGcGAUgCGGcGCUGCUGGCCAACg -3'
miRNA:   3'- -GGCgUuCUAgGUC-CGACGGCUGGUUG- -5'
18804 5' -55.7 NC_004683.1 + 26449 0.75 0.234175
Target:  5'- gCCGCAGugcacaccgcGAUCCAGGCcGCCcGCCGAg -3'
miRNA:   3'- -GGCGUU----------CUAGGUCCGaCGGcUGGUUg -5'
18804 5' -55.7 NC_004683.1 + 2636 0.74 0.253081
Target:  5'- gCGCAuGAUCCAGGaC-GCCGACCuGGCc -3'
miRNA:   3'- gGCGUuCUAGGUCC-GaCGGCUGG-UUG- -5'
18804 5' -55.7 NC_004683.1 + 24898 0.73 0.287357
Target:  5'- cCCGCAAGAcCCGgccgcuguGGCUGCUGcggcugaucACCAACg -3'
miRNA:   3'- -GGCGUUCUaGGU--------CCGACGGC---------UGGUUG- -5'
18804 5' -55.7 NC_004683.1 + 47533 0.73 0.294635
Target:  5'- uCUGCGuGAUCCcuGGCUGCaCGACCGu- -3'
miRNA:   3'- -GGCGUuCUAGGu-CCGACG-GCUGGUug -5'
18804 5' -55.7 NC_004683.1 + 46663 0.71 0.402227
Target:  5'- cCCGUaacGAGA-CUGGGCUGCUGGucCCGACg -3'
miRNA:   3'- -GGCG---UUCUaGGUCCGACGGCU--GGUUG- -5'
18804 5' -55.7 NC_004683.1 + 6546 0.71 0.411476
Target:  5'- cCCGCAAccacaCAGGC-GCCGGCCGAg -3'
miRNA:   3'- -GGCGUUcuag-GUCCGaCGGCUGGUUg -5'
18804 5' -55.7 NC_004683.1 + 42584 0.71 0.420855
Target:  5'- gCCGCGGcGGUCgGGGCcgGUCGuCCGGCu -3'
miRNA:   3'- -GGCGUU-CUAGgUCCGa-CGGCuGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.