miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18805 3' -58.3 NC_004683.1 + 9951 0.66 0.579811
Target:  5'- gCGACCGUGaCGAGCgggGCugccuGAaGCGUCg -3'
miRNA:   3'- -GCUGGCGC-GCUCGag-CGu----CU-CGUAGa -5'
18805 3' -58.3 NC_004683.1 + 51682 0.66 0.579811
Target:  5'- uGAUCGCGuCGAGCUCgGCcuGGCGa-- -3'
miRNA:   3'- gCUGGCGC-GCUCGAG-CGucUCGUaga -5'
18805 3' -58.3 NC_004683.1 + 56226 0.66 0.576607
Target:  5'- uGAgCGUGgGAGCggaagucguugauggGCAGGGCAUCg -3'
miRNA:   3'- gCUgGCGCgCUCGag-------------CGUCUCGUAGa -5'
18805 3' -58.3 NC_004683.1 + 24438 0.66 0.570211
Target:  5'- gCGACCGCGUG-GCcUGCGGcgacgagucggcguuGCAUCUc -3'
miRNA:   3'- -GCUGGCGCGCuCGaGCGUCu--------------CGUAGA- -5'
18805 3' -58.3 NC_004683.1 + 42939 0.66 0.569147
Target:  5'- cCGACCGCGaCGGGCaUGUGGcGCAa-- -3'
miRNA:   3'- -GCUGGCGC-GCUCGaGCGUCuCGUaga -5'
18805 3' -58.3 NC_004683.1 + 33327 0.66 0.558531
Target:  5'- uGGCCGCggaucuggGCGAGCgcgUCGCGG-GCcUCUu -3'
miRNA:   3'- gCUGGCG--------CGCUCG---AGCGUCuCGuAGA- -5'
18805 3' -58.3 NC_004683.1 + 2838 0.66 0.547973
Target:  5'- uGGCCGcCGcCGAGCUCGCcgcGGCcgCc -3'
miRNA:   3'- gCUGGC-GC-GCUCGAGCGuc-UCGuaGa -5'
18805 3' -58.3 NC_004683.1 + 27466 0.67 0.496264
Target:  5'- -aGCCGCaGCGAGCgCGCuGGAGCcAUUUa -3'
miRNA:   3'- gcUGGCG-CGCUCGaGCG-UCUCG-UAGA- -5'
18805 3' -58.3 NC_004683.1 + 48922 0.67 0.496264
Target:  5'- gCGGCCGU-CGAGUUCGCGGccAGCGcguuUCUu -3'
miRNA:   3'- -GCUGGCGcGCUCGAGCGUC--UCGU----AGA- -5'
18805 3' -58.3 NC_004683.1 + 25724 0.67 0.48618
Target:  5'- gGACCGCcaccgcgaucgGCGgcAGCUCGCGGuAGC-UCa -3'
miRNA:   3'- gCUGGCG-----------CGC--UCGAGCGUC-UCGuAGa -5'
18805 3' -58.3 NC_004683.1 + 42717 0.67 0.48618
Target:  5'- gCGGCCGC-CGAuCUCGUcgcGGGCGUCg -3'
miRNA:   3'- -GCUGGCGcGCUcGAGCGu--CUCGUAGa -5'
18805 3' -58.3 NC_004683.1 + 8168 0.67 0.48618
Target:  5'- aGGCCGCGaaGGC-CGCggccaagcaGGGGCAUCg -3'
miRNA:   3'- gCUGGCGCgcUCGaGCG---------UCUCGUAGa -5'
18805 3' -58.3 NC_004683.1 + 54630 0.67 0.48618
Target:  5'- uGACCGUGUGAcgUCGCGGGcGCAUa- -3'
miRNA:   3'- gCUGGCGCGCUcgAGCGUCU-CGUAga -5'
18805 3' -58.3 NC_004683.1 + 41176 0.67 0.476194
Target:  5'- cCGGCCGUG-GcAGCggCGCGGGGCcgCUu -3'
miRNA:   3'- -GCUGGCGCgC-UCGa-GCGUCUCGuaGA- -5'
18805 3' -58.3 NC_004683.1 + 51578 0.67 0.476194
Target:  5'- cCGAUCGCGCGG--UCGguGGGCGcgUCg -3'
miRNA:   3'- -GCUGGCGCGCUcgAGCguCUCGU--AGa -5'
18805 3' -58.3 NC_004683.1 + 9380 0.68 0.456536
Target:  5'- gGGCUG-GaUGAGCUCGCGGGGCGc-- -3'
miRNA:   3'- gCUGGCgC-GCUCGAGCGUCUCGUaga -5'
18805 3' -58.3 NC_004683.1 + 12101 0.68 0.456536
Target:  5'- --cCCGCGCGGGCgCGCuGGcccGCGUCg -3'
miRNA:   3'- gcuGGCGCGCUCGaGCGuCU---CGUAGa -5'
18805 3' -58.3 NC_004683.1 + 25877 0.68 0.456536
Target:  5'- gCGGCUcgGCGuCGAGUUCGCcGGGCAgacgCUg -3'
miRNA:   3'- -GCUGG--CGC-GCUCGAGCGuCUCGUa---GA- -5'
18805 3' -58.3 NC_004683.1 + 49953 0.68 0.456536
Target:  5'- gGAUgGCGUuGGCgCGCAGAGUGUCc -3'
miRNA:   3'- gCUGgCGCGcUCGaGCGUCUCGUAGa -5'
18805 3' -58.3 NC_004683.1 + 7876 0.68 0.437322
Target:  5'- cCGACCaagGCGCaGGGCaucgCGCAGAaggugGCAUCg -3'
miRNA:   3'- -GCUGG---CGCG-CUCGa---GCGUCU-----CGUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.