miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18805 5' -52.3 NC_004683.1 + 21743 0.66 0.867806
Target:  5'- -cAGCCCGCGg-GCAGAC-CG-GUGGu -3'
miRNA:   3'- acUUGGGUGCgaCGUCUGaGCuUACC- -5'
18805 5' -52.3 NC_004683.1 + 21131 0.66 0.859545
Target:  5'- cUGAugCCGCGCUGCuGGuCcCGAAc-- -3'
miRNA:   3'- -ACUugGGUGCGACGuCU-GaGCUUacc -5'
18805 5' -52.3 NC_004683.1 + 25060 0.67 0.842293
Target:  5'- cGuGCCCGCGCUGCuGAaccuGGUGGc -3'
miRNA:   3'- aCuUGGGUGCGACGuCUgagcUUACC- -5'
18805 5' -52.3 NC_004683.1 + 51637 0.67 0.81473
Target:  5'- cGAGCCCgcggucGCGCUGCcgGGGUUCGuugGUGGc -3'
miRNA:   3'- aCUUGGG------UGCGACG--UCUGAGCu--UACC- -5'
18805 5' -52.3 NC_004683.1 + 13427 0.68 0.775259
Target:  5'- cGGAgaCugGggGCAGGCUCGAggGGg -3'
miRNA:   3'- aCUUggGugCgaCGUCUGAGCUuaCC- -5'
18805 5' -52.3 NC_004683.1 + 5951 0.68 0.775259
Target:  5'- cGAGCCCucccaGCUGCuGGGC-CGGccgGUGGg -3'
miRNA:   3'- aCUUGGGug---CGACG-UCUGaGCU---UACC- -5'
18805 5' -52.3 NC_004683.1 + 40237 0.68 0.76498
Target:  5'- -aGGCCCGCGCcgagcUGCAGGCgcgcgUCGAugaguUGGa -3'
miRNA:   3'- acUUGGGUGCG-----ACGUCUG-----AGCUu----ACC- -5'
18805 5' -52.3 NC_004683.1 + 4589 0.69 0.722573
Target:  5'- cUGAACCUGCGC---GGugUCGAcgGGu -3'
miRNA:   3'- -ACUUGGGUGCGacgUCugAGCUuaCC- -5'
18805 5' -52.3 NC_004683.1 + 34051 0.69 0.689751
Target:  5'- --cGCgCCACGCUGCAGGCccaUGAuGUGGu -3'
miRNA:   3'- acuUG-GGUGCGACGUCUGa--GCU-UACC- -5'
18805 5' -52.3 NC_004683.1 + 17183 0.69 0.689751
Target:  5'- gGAACCCGuCGa-GCAGGUUCGAcgGGa -3'
miRNA:   3'- aCUUGGGU-GCgaCGUCUGAGCUuaCC- -5'
18805 5' -52.3 NC_004683.1 + 40506 0.7 0.656411
Target:  5'- cGGguGCCCACaCUGCGG-CUCG-GUGGa -3'
miRNA:   3'- aCU--UGGGUGcGACGUCuGAGCuUACC- -5'
18805 5' -52.3 NC_004683.1 + 613 0.73 0.512956
Target:  5'- gGAACUCggccugaacGCGCUGUucggcaucGACUCGAAUGGc -3'
miRNA:   3'- aCUUGGG---------UGCGACGu-------CUGAGCUUACC- -5'
18805 5' -52.3 NC_004683.1 + 47538 0.74 0.411825
Target:  5'- gUGAuCCCugGCUGCAcGACcguggucgcCGAAUGGg -3'
miRNA:   3'- -ACUuGGGugCGACGU-CUGa--------GCUUACC- -5'
18805 5' -52.3 NC_004683.1 + 51721 0.75 0.402399
Target:  5'- cGAACCCcggcaGCGCgaccGCGGGCUCGGGggcGGg -3'
miRNA:   3'- aCUUGGG-----UGCGa---CGUCUGAGCUUa--CC- -5'
18805 5' -52.3 NC_004683.1 + 23389 0.76 0.357377
Target:  5'- gGAugCCGCGCUGCAGcgggaugacgauGCUCGugccgGGg -3'
miRNA:   3'- aCUugGGUGCGACGUC------------UGAGCuua--CC- -5'
18805 5' -52.3 NC_004683.1 + 33878 1.11 0.00169
Target:  5'- aUGAACCCACGCUGCAGACUCGAAUGGc -3'
miRNA:   3'- -ACUUGGGUGCGACGUCUGAGCUUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.