miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18806 3' -56.6 NC_004683.1 + 21840 0.66 0.666451
Target:  5'- cGGugGCCGCgGUcguugaACCaccggucUGCCCGCGg -3'
miRNA:   3'- aCUugCGGCGaCG------UGGga-----AUGGGUGC- -5'
18806 3' -56.6 NC_004683.1 + 24662 0.66 0.666451
Target:  5'- cGcGCGCCuGCUGCGCaCCa-ACCC-CGa -3'
miRNA:   3'- aCuUGCGG-CGACGUG-GGaaUGGGuGC- -5'
18806 3' -56.6 NC_004683.1 + 40944 0.66 0.666451
Target:  5'- gGAGuCGCUGCccGUACUC--GCCCGCGa -3'
miRNA:   3'- aCUU-GCGGCGa-CGUGGGaaUGGGUGC- -5'
18806 3' -56.6 NC_004683.1 + 18496 0.66 0.666451
Target:  5'- cGAACcuggaGUCGCUGCACaaCCUU-CCCgACGu -3'
miRNA:   3'- aCUUG-----CGGCGACGUG--GGAAuGGG-UGC- -5'
18806 3' -56.6 NC_004683.1 + 45545 0.66 0.664276
Target:  5'- -cGGCGCCGCgacaaccacaACCuCUgGCCCACGg -3'
miRNA:   3'- acUUGCGGCGacg-------UGG-GAaUGGGUGC- -5'
18806 3' -56.6 NC_004683.1 + 10670 0.66 0.655565
Target:  5'- -cAGCGCgGC-GCGCCUUcucgACCCGCu -3'
miRNA:   3'- acUUGCGgCGaCGUGGGAa---UGGGUGc -5'
18806 3' -56.6 NC_004683.1 + 38494 0.66 0.655565
Target:  5'- cGGAUGCuCGCUGCcuACgCCgacGCCUugGg -3'
miRNA:   3'- aCUUGCG-GCGACG--UG-GGaa-UGGGugC- -5'
18806 3' -56.6 NC_004683.1 + 15622 0.66 0.655565
Target:  5'- cGGgcACGCCGCUGCGgaggUAUCCACu -3'
miRNA:   3'- aCU--UGCGGCGACGUgggaAUGGGUGc -5'
18806 3' -56.6 NC_004683.1 + 27539 0.66 0.655565
Target:  5'- aGcGCGCuCGCUGCGgCU--GCCUGCGg -3'
miRNA:   3'- aCuUGCG-GCGACGUgGGaaUGGGUGC- -5'
18806 3' -56.6 NC_004683.1 + 19264 0.66 0.644659
Target:  5'- -cGGCGCCgGCcuugaGCGCCCaguccUUGCCCACc -3'
miRNA:   3'- acUUGCGG-CGa----CGUGGG-----AAUGGGUGc -5'
18806 3' -56.6 NC_004683.1 + 42652 0.66 0.633741
Target:  5'- cGAcCGCCGCgGCGCgCUcgGCCuCGCu -3'
miRNA:   3'- aCUuGCGGCGaCGUGgGAa-UGG-GUGc -5'
18806 3' -56.6 NC_004683.1 + 54187 0.66 0.633741
Target:  5'- gGGucACGCCGCacacgcauUGCACCUcgACUCGCc -3'
miRNA:   3'- aCU--UGCGGCG--------ACGUGGGaaUGGGUGc -5'
18806 3' -56.6 NC_004683.1 + 37774 0.66 0.633741
Target:  5'- cGGuuguCGCCacuGCUGaCACCCUUACUgAUGc -3'
miRNA:   3'- aCUu---GCGG---CGAC-GUGGGAAUGGgUGC- -5'
18806 3' -56.6 NC_004683.1 + 6214 0.66 0.633741
Target:  5'- cGAACcaGCCGC-GCgACCCguuggGCCgGCGg -3'
miRNA:   3'- aCUUG--CGGCGaCG-UGGGaa---UGGgUGC- -5'
18806 3' -56.6 NC_004683.1 + 20331 0.66 0.632649
Target:  5'- -cGACGCCGUUGCugaucgcGCCgaUACCCGg- -3'
miRNA:   3'- acUUGCGGCGACG-------UGGgaAUGGGUgc -5'
18806 3' -56.6 NC_004683.1 + 40076 0.66 0.622821
Target:  5'- cGAcGCGCUGUU-CGCCCggGCCCAgCGc -3'
miRNA:   3'- aCU-UGCGGCGAcGUGGGaaUGGGU-GC- -5'
18806 3' -56.6 NC_004683.1 + 24386 0.66 0.62173
Target:  5'- -cGGCGUCGCUGUugCCguagUagccgucgaccggGCCCAUGa -3'
miRNA:   3'- acUUGCGGCGACGugGGa---A-------------UGGGUGC- -5'
18806 3' -56.6 NC_004683.1 + 510 0.66 0.62173
Target:  5'- cGAcCGCCGCgccagccaccgccUGCGCCaucaccGCCCGCa -3'
miRNA:   3'- aCUuGCGGCG-------------ACGUGGgaa---UGGGUGc -5'
18806 3' -56.6 NC_004683.1 + 6841 0.66 0.61191
Target:  5'- cGGucGCGCCGCaaggGCACgCUUaccaaGCCCuACGg -3'
miRNA:   3'- aCU--UGCGGCGa---CGUGgGAA-----UGGG-UGC- -5'
18806 3' -56.6 NC_004683.1 + 41702 0.67 0.601016
Target:  5'- aUGuuCGCCGC-GCGCCCggAUCCGg- -3'
miRNA:   3'- -ACuuGCGGCGaCGUGGGaaUGGGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.