miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18806 3' -56.6 NC_004683.1 + 21725 0.67 0.594492
Target:  5'- aUGGACGCCGC-GCuccaggguguagacgGCCCagUugCCGCc -3'
miRNA:   3'- -ACUUGCGGCGaCG---------------UGGGa-AugGGUGc -5'
18806 3' -56.6 NC_004683.1 + 33569 0.67 0.590148
Target:  5'- cUGAACGUCG--GCACCUgccCCCACa -3'
miRNA:   3'- -ACUUGCGGCgaCGUGGGaauGGGUGc -5'
18806 3' -56.6 NC_004683.1 + 15025 0.67 0.590148
Target:  5'- uUGAacagGCGCuCGUUGCccucACCCUcaUAcCCCGCGa -3'
miRNA:   3'- -ACU----UGCG-GCGACG----UGGGA--AU-GGGUGC- -5'
18806 3' -56.6 NC_004683.1 + 33878 0.67 0.586894
Target:  5'- aUGAACcCaCGCUGCagacucgaauggcuACCCUcgACCCGCu -3'
miRNA:   3'- -ACUUGcG-GCGACG--------------UGGGAa-UGGGUGc -5'
18806 3' -56.6 NC_004683.1 + 47660 0.67 0.568525
Target:  5'- cGAACGCCGCgacgacggugUGUGCCUggcguaucgggUUGCCCgauuGCGg -3'
miRNA:   3'- aCUUGCGGCG----------ACGUGGG-----------AAUGGG----UGC- -5'
18806 3' -56.6 NC_004683.1 + 39627 0.67 0.568525
Target:  5'- gUGGGCGCCGCcggggugGCgACCCgagGgCCGCu -3'
miRNA:   3'- -ACUUGCGGCGa------CG-UGGGaa-UgGGUGc -5'
18806 3' -56.6 NC_004683.1 + 13906 0.67 0.568525
Target:  5'- aGAACGCCcCUGCggggcaacgaugACCCacUAUCCACa -3'
miRNA:   3'- aCUUGCGGcGACG------------UGGGa-AUGGGUGc -5'
18806 3' -56.6 NC_004683.1 + 24707 0.67 0.568525
Target:  5'- cGcGCGCCGCcGCGaCCgcaacGCCCGCGu -3'
miRNA:   3'- aCuUGCGGCGaCGUgGGaa---UGGGUGC- -5'
18806 3' -56.6 NC_004683.1 + 5201 0.67 0.568525
Target:  5'- cGAugGCCGaCaGCGCCCggGCaCGCa -3'
miRNA:   3'- aCUugCGGC-GaCGUGGGaaUGgGUGc -5'
18806 3' -56.6 NC_004683.1 + 12624 0.67 0.565298
Target:  5'- cGAGCGCCGCcccgauaucguccaUGCccuucgagaaGCCCUUGgCgGCGu -3'
miRNA:   3'- aCUUGCGGCG--------------ACG----------UGGGAAUgGgUGC- -5'
18806 3' -56.6 NC_004683.1 + 21723 0.67 0.557786
Target:  5'- -cAGCGCCGCcgGauucaACCCa-GCCCGCGg -3'
miRNA:   3'- acUUGCGGCGa-Cg----UGGGaaUGGGUGC- -5'
18806 3' -56.6 NC_004683.1 + 42752 0.68 0.547106
Target:  5'- cGAA-GCUGCUGUugCCgccgucgUGuCCCGCGa -3'
miRNA:   3'- aCUUgCGGCGACGugGGa------AU-GGGUGC- -5'
18806 3' -56.6 NC_004683.1 + 37710 0.68 0.547106
Target:  5'- cGAcaacCGCgCGCUGC-CCCUUccACUCGCGc -3'
miRNA:   3'- aCUu---GCG-GCGACGuGGGAA--UGGGUGC- -5'
18806 3' -56.6 NC_004683.1 + 22282 0.68 0.536491
Target:  5'- gUGGugGCgGCUcGuCGCCCgc-CCCGCGc -3'
miRNA:   3'- -ACUugCGgCGA-C-GUGGGaauGGGUGC- -5'
18806 3' -56.6 NC_004683.1 + 12639 0.68 0.536491
Target:  5'- ----gGCCGCgGCGCCgCUgcuggGCCCGCu -3'
miRNA:   3'- acuugCGGCGaCGUGG-GAa----UGGGUGc -5'
18806 3' -56.6 NC_004683.1 + 18439 0.68 0.525948
Target:  5'- aUGAACGCgGUgccGCugCCgugaccgACCCGCu -3'
miRNA:   3'- -ACUUGCGgCGa--CGugGGaa-----UGGGUGc -5'
18806 3' -56.6 NC_004683.1 + 12892 0.68 0.525948
Target:  5'- aGcAGCGCCGCauCGCCCgggUAUCCGCc -3'
miRNA:   3'- aC-UUGCGGCGacGUGGGa--AUGGGUGc -5'
18806 3' -56.6 NC_004683.1 + 46619 0.68 0.521753
Target:  5'- -cAAgGCCGCcGCGCCCgucgaucagccgACCCGCa -3'
miRNA:   3'- acUUgCGGCGaCGUGGGaa----------UGGGUGc -5'
18806 3' -56.6 NC_004683.1 + 40930 0.68 0.514443
Target:  5'- cGGGCGCCgaGCUGaccgcgcCGCCgUUGCCCGuCGg -3'
miRNA:   3'- aCUUGCGG--CGAC-------GUGGgAAUGGGU-GC- -5'
18806 3' -56.6 NC_004683.1 + 51043 0.68 0.505107
Target:  5'- cGAuCGCCGCgaUGCGCCagcaguuCCCGCa -3'
miRNA:   3'- aCUuGCGGCG--ACGUGGgaau---GGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.