miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18806 5' -65.9 NC_004683.1 + 20526 0.66 0.285875
Target:  5'- cGCCGgccauCGGcGCGGuGGccccugcaccGCCGGUGCCgccguuGGCCg -3'
miRNA:   3'- -UGGC-----GCU-CGCC-CC----------UGGCCACGG------CCGG- -5'
18806 5' -65.9 NC_004683.1 + 48691 0.66 0.285875
Target:  5'- uCCGCGGGCccagucGGGGugCaucgGCCGGgCa -3'
miRNA:   3'- uGGCGCUCG------CCCCugGcca-CGGCCgG- -5'
18806 5' -65.9 NC_004683.1 + 21809 0.66 0.279292
Target:  5'- cCCGCGGGCuGGGuugaauCCGGcggcgcUGCCaGcGCCa -3'
miRNA:   3'- uGGCGCUCGcCCCu-----GGCC------ACGG-C-CGG- -5'
18806 5' -65.9 NC_004683.1 + 21551 0.66 0.27864
Target:  5'- cGCCGCcAGCGGGGcgugugaggcgaaACCugcGGUagcagugucugcGCCGGCg -3'
miRNA:   3'- -UGGCGcUCGCCCC-------------UGG---CCA------------CGGCCGg -5'
18806 5' -65.9 NC_004683.1 + 21746 0.66 0.27283
Target:  5'- cCCGCGGGCa--GACCGGUGguucaacgacCgCGGCCa -3'
miRNA:   3'- uGGCGCUCGcccCUGGCCAC----------G-GCCGG- -5'
18806 5' -65.9 NC_004683.1 + 46975 0.66 0.27283
Target:  5'- cACCGCGcguGGCgaucaGGGGcagauguccacACCGGUcaccgaGCCGGCg -3'
miRNA:   3'- -UGGCGC---UCG-----CCCC-----------UGGCCA------CGGCCGg -5'
18806 5' -65.9 NC_004683.1 + 46114 0.66 0.266489
Target:  5'- cAUCGUG-GCGcGGGACCGc--UCGGCCg -3'
miRNA:   3'- -UGGCGCuCGC-CCCUGGCcacGGCCGG- -5'
18806 5' -65.9 NC_004683.1 + 56934 0.66 0.266489
Target:  5'- cCCGCGAgGUGucGACCGGUG--GGCCa -3'
miRNA:   3'- uGGCGCU-CGCccCUGGCCACggCCGG- -5'
18806 5' -65.9 NC_004683.1 + 40760 0.66 0.266489
Target:  5'- cACCuCGAGCaGGuGACCGaccucgGCCaGGCCg -3'
miRNA:   3'- -UGGcGCUCGcCC-CUGGCca----CGG-CCGG- -5'
18806 5' -65.9 NC_004683.1 + 23805 0.66 0.260267
Target:  5'- cGCCG-GGGUGGuGccgccGCCGGUGCC-GCCg -3'
miRNA:   3'- -UGGCgCUCGCCcC-----UGGCCACGGcCGG- -5'
18806 5' -65.9 NC_004683.1 + 17724 0.66 0.260267
Target:  5'- aGCCGCuGA-UGGGcaucACCGGcaucGCCGGCCu -3'
miRNA:   3'- -UGGCG-CUcGCCCc---UGGCCa---CGGCCGG- -5'
18806 5' -65.9 NC_004683.1 + 13423 0.66 0.260267
Target:  5'- gACUGgGGGCaggcucgagGGGGuggucGCCGGUG-UGGCCg -3'
miRNA:   3'- -UGGCgCUCG---------CCCC-----UGGCCACgGCCGG- -5'
18806 5' -65.9 NC_004683.1 + 31659 0.66 0.254165
Target:  5'- uCCGCGcaugGGCGGGGaguuuGCCGaGUcGUCGGaCCc -3'
miRNA:   3'- uGGCGC----UCGCCCC-----UGGC-CA-CGGCC-GG- -5'
18806 5' -65.9 NC_004683.1 + 18214 0.66 0.254165
Target:  5'- gGCCGCcacGGCGuGcGGua-GGUGCCGGCg -3'
miRNA:   3'- -UGGCGc--UCGC-C-CCuggCCACGGCCGg -5'
18806 5' -65.9 NC_004683.1 + 23362 0.66 0.254165
Target:  5'- uGCuCGUGc-CGGGGACCGG-GCugCGGUCg -3'
miRNA:   3'- -UG-GCGCucGCCCCUGGCCaCG--GCCGG- -5'
18806 5' -65.9 NC_004683.1 + 49175 0.66 0.254165
Target:  5'- aGCUGCucugGGGCGGGuACCaccucGUGCUGGCUa -3'
miRNA:   3'- -UGGCG----CUCGCCCcUGGc----CACGGCCGG- -5'
18806 5' -65.9 NC_004683.1 + 4213 0.66 0.24818
Target:  5'- cCC-CGAGaucGGGCCGGUgacgugGCCGGCCu -3'
miRNA:   3'- uGGcGCUCgccCCUGGCCA------CGGCCGG- -5'
18806 5' -65.9 NC_004683.1 + 20463 0.66 0.245819
Target:  5'- gGCCgGCGAGCGGaaaGCCGGaggcggaggugggGCCGGUg -3'
miRNA:   3'- -UGG-CGCUCGCCcc-UGGCCa------------CGGCCGg -5'
18806 5' -65.9 NC_004683.1 + 26540 0.67 0.242313
Target:  5'- uCgGCGGGCGGccuGGAUcgCGGUGUgcacugCGGCCa -3'
miRNA:   3'- uGgCGCUCGCC---CCUG--GCCACG------GCCGG- -5'
18806 5' -65.9 NC_004683.1 + 13487 0.67 0.242313
Target:  5'- -gCGCGAaCGGGG-CCGccUGCgGGCCa -3'
miRNA:   3'- ugGCGCUcGCCCCuGGCc-ACGgCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.