miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18806 5' -65.9 NC_004683.1 + 259 0.67 0.230925
Target:  5'- cCCGCG-GCGGGG-CUGGUcGCgaCGGUg -3'
miRNA:   3'- uGGCGCuCGCCCCuGGCCA-CG--GCCGg -5'
18806 5' -65.9 NC_004683.1 + 410 0.68 0.199448
Target:  5'- aGCUGCGGGCGGuGAUggcgcaggCGGUGgCUGGCg -3'
miRNA:   3'- -UGGCGCUCGCCcCUG--------GCCAC-GGCCGg -5'
18806 5' -65.9 NC_004683.1 + 1372 0.69 0.159262
Target:  5'- gGCCGCGAGCGccucGGCUGGcacgacaaGCCGGCg -3'
miRNA:   3'- -UGGCGCUCGCcc--CUGGCCa-------CGGCCGg -5'
18806 5' -65.9 NC_004683.1 + 4213 0.66 0.24818
Target:  5'- cCC-CGAGaucGGGCCGGUgacgugGCCGGCCu -3'
miRNA:   3'- uGGcGCUCgccCCUGGCCA------CGGCCGG- -5'
18806 5' -65.9 NC_004683.1 + 5796 0.78 0.035179
Target:  5'- cCCGUGGGCuGGuugcccuGGCCGGUGCCGGUCg -3'
miRNA:   3'- uGGCGCUCGcCC-------CUGGCCACGGCCGG- -5'
18806 5' -65.9 NC_004683.1 + 6953 0.7 0.136683
Target:  5'- gGCgGCGGGCGGuGGugCaGcucGUCGGCCg -3'
miRNA:   3'- -UGgCGCUCGCC-CCugGcCa--CGGCCGG- -5'
18806 5' -65.9 NC_004683.1 + 7389 0.69 0.154885
Target:  5'- cGCCGCGGuUGGGGGCgCGGUgaGCUuccagaccucgguGGCCa -3'
miRNA:   3'- -UGGCGCUcGCCCCUG-GCCA--CGG-------------CCGG- -5'
18806 5' -65.9 NC_004683.1 + 8840 0.68 0.191709
Target:  5'- gGCCGCGA-CGaGGGGCCGuugcccucaccgaacGcGCCGGCg -3'
miRNA:   3'- -UGGCGCUcGC-CCCUGGC---------------CaCGGCCGg -5'
18806 5' -65.9 NC_004683.1 + 12033 0.72 0.1055
Target:  5'- cGCC-CGcGCGGGGcuaccGCCGGagGCUGGCCc -3'
miRNA:   3'- -UGGcGCuCGCCCC-----UGGCCa-CGGCCGG- -5'
18806 5' -65.9 NC_004683.1 + 12801 0.67 0.225402
Target:  5'- cGCCGCuGGCGGauacccGGGCgaugCGGcgcUGCUGGCCa -3'
miRNA:   3'- -UGGCGcUCGCC------CCUG----GCC---ACGGCCGG- -5'
18806 5' -65.9 NC_004683.1 + 12995 0.69 0.159262
Target:  5'- -gCGCGAGCGcggcuuccugccGGGcGCCGGUGgccCCGGCg -3'
miRNA:   3'- ugGCGCUCGC------------CCC-UGGCCAC---GGCCGg -5'
18806 5' -65.9 NC_004683.1 + 13118 0.7 0.14023
Target:  5'- gGCUGCccggagGGGCaucggcGGGACCGGUGCCgaugacccGGCCu -3'
miRNA:   3'- -UGGCG------CUCGc-----CCCUGGCCACGG--------CCGG- -5'
18806 5' -65.9 NC_004683.1 + 13423 0.66 0.260267
Target:  5'- gACUGgGGGCaggcucgagGGGGuggucGCCGGUG-UGGCCg -3'
miRNA:   3'- -UGGCgCUCG---------CCCC-----UGGCCACgGCCGG- -5'
18806 5' -65.9 NC_004683.1 + 13487 0.67 0.242313
Target:  5'- -gCGCGAaCGGGG-CCGccUGCgGGCCa -3'
miRNA:   3'- ugGCGCUcGCCCCuGGCc-ACGgCCGG- -5'
18806 5' -65.9 NC_004683.1 + 17724 0.66 0.260267
Target:  5'- aGCCGCuGA-UGGGcaucACCGGcaucGCCGGCCu -3'
miRNA:   3'- -UGGCG-CUcGCCCc---UGGCCa---CGGCCGG- -5'
18806 5' -65.9 NC_004683.1 + 18214 0.66 0.254165
Target:  5'- gGCCGCcacGGCGuGcGGua-GGUGCCGGCg -3'
miRNA:   3'- -UGGCGc--UCGC-C-CCuggCCACGGCCGg -5'
18806 5' -65.9 NC_004683.1 + 18546 0.67 0.230925
Target:  5'- uGCCGCauccauuCGGGGAgCGG-GUCGGUCa -3'
miRNA:   3'- -UGGCGcuc----GCCCCUgGCCaCGGCCGG- -5'
18806 5' -65.9 NC_004683.1 + 20463 0.66 0.245819
Target:  5'- gGCCgGCGAGCGGaaaGCCGGaggcggaggugggGCCGGUg -3'
miRNA:   3'- -UGG-CGCUCGCCcc-UGGCCa------------CGGCCGg -5'
18806 5' -65.9 NC_004683.1 + 20526 0.66 0.285875
Target:  5'- cGCCGgccauCGGcGCGGuGGccccugcaccGCCGGUGCCgccguuGGCCg -3'
miRNA:   3'- -UGGC-----GCU-CGCC-CC----------UGGCCACGG------CCGG- -5'
18806 5' -65.9 NC_004683.1 + 20557 0.68 0.194579
Target:  5'- aACgGCGgguuuccuGGCGGGGcguCUGGUGgCGGCg -3'
miRNA:   3'- -UGgCGC--------UCGCCCCu--GGCCACgGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.