Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18806 | 5' | -65.9 | NC_004683.1 | + | 20463 | 0.66 | 0.245819 |
Target: 5'- gGCCgGCGAGCGGaaaGCCGGaggcggaggugggGCCGGUg -3' miRNA: 3'- -UGG-CGCUCGCCcc-UGGCCa------------CGGCCGg -5' |
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18806 | 5' | -65.9 | NC_004683.1 | + | 20557 | 0.68 | 0.194579 |
Target: 5'- aACgGCGgguuuccuGGCGGGGcguCUGGUGgCGGCg -3' miRNA: 3'- -UGgCGC--------UCGCCCCu--GGCCACgGCCGg -5' |
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18806 | 5' | -65.9 | NC_004683.1 | + | 44776 | 0.68 | 0.194579 |
Target: 5'- gACCcgGCG-GCGGcGGGCCGcGUGCCcGCg -3' miRNA: 3'- -UGG--CGCuCGCC-CCUGGC-CACGGcCGg -5' |
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18806 | 5' | -65.9 | NC_004683.1 | + | 410 | 0.68 | 0.199448 |
Target: 5'- aGCUGCGGGCGGuGAUggcgcaggCGGUGgCUGGCg -3' miRNA: 3'- -UGGCGCUCGCCcCUG--------GCCAC-GGCCGg -5' |
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18806 | 5' | -65.9 | NC_004683.1 | + | 31222 | 0.67 | 0.207457 |
Target: 5'- cCCGCGGGUGGGcagagcgacaaccGCCGGUGa-GGCUg -3' miRNA: 3'- uGGCGCUCGCCCc------------UGGCCACggCCGG- -5' |
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18806 | 5' | -65.9 | NC_004683.1 | + | 12801 | 0.67 | 0.225402 |
Target: 5'- cGCCGCuGGCGGauacccGGGCgaugCGGcgcUGCUGGCCa -3' miRNA: 3'- -UGGCGcUCGCC------CCUG----GCC---ACGGCCGG- -5' |
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18806 | 5' | -65.9 | NC_004683.1 | + | 26963 | 0.67 | 0.225402 |
Target: 5'- uCCGCGcguacGCGuGaGcGCCGGgcagGCCGGCCa -3' miRNA: 3'- uGGCGCu----CGC-C-CcUGGCCa---CGGCCGG- -5' |
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18806 | 5' | -65.9 | NC_004683.1 | + | 259 | 0.67 | 0.230925 |
Target: 5'- cCCGCG-GCGGGG-CUGGUcGCgaCGGUg -3' miRNA: 3'- uGGCGCuCGCCCCuGGCCA-CG--GCCGg -5' |
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18806 | 5' | -65.9 | NC_004683.1 | + | 53574 | 0.67 | 0.236561 |
Target: 5'- cGCCGCG-GCaGacGCCGGccgcaccGCCGGCCg -3' miRNA: 3'- -UGGCGCuCGcCccUGGCCa------CGGCCGG- -5' |
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18806 | 5' | -65.9 | NC_004683.1 | + | 31995 | 0.68 | 0.184694 |
Target: 5'- cCCGCGGGCGGcugaggcGGugCGGcugacaugGUCGGCa -3' miRNA: 3'- uGGCGCUCGCC-------CCugGCCa-------CGGCCGg -5' |
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18806 | 5' | -65.9 | NC_004683.1 | + | 1372 | 0.69 | 0.159262 |
Target: 5'- gGCCGCGAGCGccucGGCUGGcacgacaaGCCGGCg -3' miRNA: 3'- -UGGCGCUCGCcc--CUGGCCa-------CGGCCGg -5' |
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18806 | 5' | -65.9 | NC_004683.1 | + | 12995 | 0.69 | 0.159262 |
Target: 5'- -gCGCGAGCGcggcuuccugccGGGcGCCGGUGgccCCGGCg -3' miRNA: 3'- ugGCGCUCGC------------CCC-UGGCCAC---GGCCGg -5' |
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18806 | 5' | -65.9 | NC_004683.1 | + | 48582 | 0.73 | 0.081096 |
Target: 5'- gGCgGCGAGaGcGGACCuGGUGCCcGGCCg -3' miRNA: 3'- -UGgCGCUCgCcCCUGG-CCACGG-CCGG- -5' |
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18806 | 5' | -65.9 | NC_004683.1 | + | 46562 | 0.72 | 0.100122 |
Target: 5'- gGCCGgcauCGAGCGGuacuGGcugccgcuGCUGGUGCCGGUCg -3' miRNA: 3'- -UGGC----GCUCGCC----CC--------UGGCCACGGCCGG- -5' |
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18806 | 5' | -65.9 | NC_004683.1 | + | 12033 | 0.72 | 0.1055 |
Target: 5'- cGCC-CGcGCGGGGcuaccGCCGGagGCUGGCCc -3' miRNA: 3'- -UGGcGCuCGCCCC-----UGGCCa-CGGCCGG- -5' |
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18806 | 5' | -65.9 | NC_004683.1 | + | 23040 | 0.71 | 0.12653 |
Target: 5'- cCCGUGGGUcGGucUCGGUGUCGGCCu -3' miRNA: 3'- uGGCGCUCGcCCcuGGCCACGGCCGG- -5' |
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18806 | 5' | -65.9 | NC_004683.1 | + | 6953 | 0.7 | 0.136683 |
Target: 5'- gGCgGCGGGCGGuGGugCaGcucGUCGGCCg -3' miRNA: 3'- -UGgCGCUCGCC-CCugGcCa--CGGCCGG- -5' |
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18806 | 5' | -65.9 | NC_004683.1 | + | 13118 | 0.7 | 0.14023 |
Target: 5'- gGCUGCccggagGGGCaucggcGGGACCGGUGCCgaugacccGGCCu -3' miRNA: 3'- -UGGCG------CUCGc-----CCCUGGCCACGG--------CCGG- -5' |
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18806 | 5' | -65.9 | NC_004683.1 | + | 24407 | 0.7 | 0.141673 |
Target: 5'- cACCGCG-GCGaucgucggcuacggcGGGACCaagccGCCGGCCa -3' miRNA: 3'- -UGGCGCuCGC---------------CCCUGGcca--CGGCCGG- -5' |
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18806 | 5' | -65.9 | NC_004683.1 | + | 23909 | 0.7 | 0.142399 |
Target: 5'- cGCCGCGuaggcguGGCGGccgacggcaucgucGGGCCGGUcacCUGGCCa -3' miRNA: 3'- -UGGCGC-------UCGCC--------------CCUGGCCAc--GGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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