Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18807 | 3' | -51.6 | NC_004683.1 | + | 1646 | 0.66 | 0.893518 |
|
Target: 5'- aGCUCAaggaCUcaUGgcGGCcguGCGGUUGGGGCc -3' miRNA: 3'- -CGAGUg---GA--ACaaCCG---UGUCAGCCUUG- -5' |
|||||||
| 18807 | 3' | -51.6 | NC_004683.1 | + | 23261 | 0.67 | 0.835598 |
|
Target: 5'- cGCgCACCUacUGgUGGCGgGGUCGGu-- -3' miRNA: 3'- -CGaGUGGA--ACaACCGUgUCAGCCuug -5' |
|||||||
| 18807 | 3' | -51.6 | NC_004683.1 | + | 51100 | 0.67 | 0.826346 |
|
Target: 5'- aGUUCACCgacuacUGgcggGGCGCGGcCGGcGCg -3' miRNA: 3'- -CGAGUGGa-----ACaa--CCGUGUCaGCCuUG- -5' |
|||||||
| 18807 | 3' | -51.6 | NC_004683.1 | + | 25544 | 0.69 | 0.734702 |
|
Target: 5'- gGCUCgGCCUgGUcgccgcccUGGcCGCGGUCGGcAACg -3' miRNA: 3'- -CGAG-UGGAaCA--------ACC-GUGUCAGCC-UUG- -5' |
|||||||
| 18807 | 3' | -51.6 | NC_004683.1 | + | 54146 | 0.7 | 0.701744 |
|
Target: 5'- cGCUCcacACCggcGUUGGCGuCGGagCGGAGCu -3' miRNA: 3'- -CGAG---UGGaa-CAACCGU-GUCa-GCCUUG- -5' |
|||||||
| 18807 | 3' | -51.6 | NC_004683.1 | + | 28381 | 0.7 | 0.679392 |
|
Target: 5'- gGUUCGCaugacggGUUGGaCGCAGcCGGGGCg -3' miRNA: 3'- -CGAGUGgaa----CAACC-GUGUCaGCCUUG- -5' |
|||||||
| 18807 | 3' | -51.6 | NC_004683.1 | + | 51054 | 0.71 | 0.600262 |
|
Target: 5'- --gCGCCUUGgcggcgGGUGCGGcCGGAGCg -3' miRNA: 3'- cgaGUGGAACaa----CCGUGUCaGCCUUG- -5' |
|||||||
| 18807 | 3' | -51.6 | NC_004683.1 | + | 20210 | 0.75 | 0.419125 |
|
Target: 5'- gGgUCACCUcGUucggaucgcUGGCGCAGUCGGuGCc -3' miRNA: 3'- -CgAGUGGAaCA---------ACCGUGUCAGCCuUG- -5' |
|||||||
| 18807 | 3' | -51.6 | NC_004683.1 | + | 34937 | 1.13 | 0.001184 |
|
Target: 5'- aGCUCACCUUGUUGGCACAGUCGGAACg -3' miRNA: 3'- -CGAGUGGAACAACCGUGUCAGCCUUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home