miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18809 3' -52.8 NC_004683.1 + 43141 0.66 0.878708
Target:  5'- aUUGGCgaaGAUCGGGCcggCUGUCGGGu -3'
miRNA:   3'- -AGCUGug-UUAGCCUGcaaGACGGCCU- -5'
18809 3' -52.8 NC_004683.1 + 24580 0.66 0.878708
Target:  5'- cUCGaaGCugGGUCcGACGUUCcauggggcGCCGGAu -3'
miRNA:   3'- -AGC--UGugUUAGcCUGCAAGa-------CGGCCU- -5'
18809 3' -52.8 NC_004683.1 + 12336 0.66 0.878708
Target:  5'- gUCGGCGCGcaacagcgucgaGUCGGcGCGUaUCcgcgUGCUGGAg -3'
miRNA:   3'- -AGCUGUGU------------UAGCC-UGCA-AG----ACGGCCU- -5'
18809 3' -52.8 NC_004683.1 + 10317 0.66 0.862805
Target:  5'- cCGACGCucgaCGaGCGUUCUGCCa-- -3'
miRNA:   3'- aGCUGUGuua-GCcUGCAAGACGGccu -5'
18809 3' -52.8 NC_004683.1 + 43499 0.66 0.854484
Target:  5'- cCGAUuccauGCAGUCGG-CGUagaGCCGGAu -3'
miRNA:   3'- aGCUG-----UGUUAGCCuGCAagaCGGCCU- -5'
18809 3' -52.8 NC_004683.1 + 38480 0.66 0.854484
Target:  5'- gCGGCGCAAgcgcUCGGAUGcucgCUGCCu-- -3'
miRNA:   3'- aGCUGUGUU----AGCCUGCaa--GACGGccu -5'
18809 3' -52.8 NC_004683.1 + 22012 0.67 0.828145
Target:  5'- cCGcCACcgcCGGGCGgaUUGCCGGGa -3'
miRNA:   3'- aGCuGUGuuaGCCUGCaaGACGGCCU- -5'
18809 3' -52.8 NC_004683.1 + 29888 0.67 0.828145
Target:  5'- gCGACugGAUcaccgucaCGGugGUUCcGgCGGAg -3'
miRNA:   3'- aGCUGugUUA--------GCCugCAAGaCgGCCU- -5'
18809 3' -52.8 NC_004683.1 + 4528 0.67 0.818936
Target:  5'- aUCGcuGCGCGucGUCGGAC--UCgGCCGGGu -3'
miRNA:   3'- -AGC--UGUGU--UAGCCUGcaAGaCGGCCU- -5'
18809 3' -52.8 NC_004683.1 + 4322 0.67 0.790159
Target:  5'- aUCGACACugaaguGUCGG-CGUag-GCCGGc -3'
miRNA:   3'- -AGCUGUGu-----UAGCCuGCAagaCGGCCu -5'
18809 3' -52.8 NC_004683.1 + 3342 0.67 0.790159
Target:  5'- cCGGCuGC-AUCGGGCacgUCaUGCCGGAu -3'
miRNA:   3'- aGCUG-UGuUAGCCUGca-AG-ACGGCCU- -5'
18809 3' -52.8 NC_004683.1 + 40291 0.68 0.758853
Target:  5'- cUCGGCgucguagGCAGccCGGGCGaaCUGCUGGAg -3'
miRNA:   3'- -AGCUG-------UGUUa-GCCUGCaaGACGGCCU- -5'
18809 3' -52.8 NC_004683.1 + 46205 0.68 0.739021
Target:  5'- cUCGAUGCAcgCGcaGGCGUUCgGuCCGGGg -3'
miRNA:   3'- -AGCUGUGUuaGC--CUGCAAGaC-GGCCU- -5'
18809 3' -52.8 NC_004683.1 + 49126 0.69 0.717721
Target:  5'- gUCGACGugcauCAGUCGGcgcCGUUCUGCUGc- -3'
miRNA:   3'- -AGCUGU-----GUUAGCCu--GCAAGACGGCcu -5'
18809 3' -52.8 NC_004683.1 + 46353 0.7 0.652133
Target:  5'- gUGAUGCAGUC-GugGaagCUGCCGGAg -3'
miRNA:   3'- aGCUGUGUUAGcCugCaa-GACGGCCU- -5'
18809 3' -52.8 NC_004683.1 + 6285 0.7 0.652133
Target:  5'- -gGACGCGGUUucGACGUUCaggaGCCGGAa -3'
miRNA:   3'- agCUGUGUUAGc-CUGCAAGa---CGGCCU- -5'
18809 3' -52.8 NC_004683.1 + 3410 0.7 0.641073
Target:  5'- cCGAUGCAGcCGGACagGUUCUGCCa-- -3'
miRNA:   3'- aGCUGUGUUaGCCUG--CAAGACGGccu -5'
18809 3' -52.8 NC_004683.1 + 1519 0.71 0.607884
Target:  5'- gCGGCgGCGAUCGG-CGUg--GCCGGGu -3'
miRNA:   3'- aGCUG-UGUUAGCCuGCAagaCGGCCU- -5'
18809 3' -52.8 NC_004683.1 + 28550 0.76 0.315874
Target:  5'- -gGACGCAGUCGGcCGUUgcGCCGGGg -3'
miRNA:   3'- agCUGUGUUAGCCuGCAAgaCGGCCU- -5'
18809 3' -52.8 NC_004683.1 + 36152 1.09 0.002019
Target:  5'- cUCGACACAAUCGGACGUUCUGCCGGAc -3'
miRNA:   3'- -AGCUGUGUUAGCCUGCAAGACGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.