miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18809 5' -55.3 NC_004683.1 + 43195 0.66 0.697946
Target:  5'- cACgCCGGuCUCGGGGuCGGuguaguACAGCGCGa -3'
miRNA:   3'- -UGgGGUC-GAGUCCUuGCC------UGUUGUGU- -5'
18809 5' -55.3 NC_004683.1 + 39700 0.66 0.697946
Target:  5'- cACCCCGGCggCGcccaccccGGAACGGGCGcC-CAg -3'
miRNA:   3'- -UGGGGUCGa-GU--------CCUUGCCUGUuGuGU- -5'
18809 5' -55.3 NC_004683.1 + 25332 0.66 0.697946
Target:  5'- uGCgaCCAGCUgCGGGAuguUGGuCAGCACGc -3'
miRNA:   3'- -UGg-GGUCGA-GUCCUu--GCCuGUUGUGU- -5'
18809 5' -55.3 NC_004683.1 + 25162 0.66 0.694681
Target:  5'- gACCgCCA-CUgAGGAACGGggccaccagguucaGCAGCGCGg -3'
miRNA:   3'- -UGG-GGUcGAgUCCUUGCC--------------UGUUGUGU- -5'
18809 5' -55.3 NC_004683.1 + 14779 0.67 0.64301
Target:  5'- aACCCCgauGGCUCcuGGGAUGG-CAACGgCAu -3'
miRNA:   3'- -UGGGG---UCGAGu-CCUUGCCuGUUGU-GU- -5'
18809 5' -55.3 NC_004683.1 + 37055 0.67 0.64301
Target:  5'- uACCCCGGCggggCGGuu-CGGGCGGCGa- -3'
miRNA:   3'- -UGGGGUCGa---GUCcuuGCCUGUUGUgu -5'
18809 5' -55.3 NC_004683.1 + 21322 0.67 0.63195
Target:  5'- gACCUCGGaCU-GGGcGCGGAUAGCACc -3'
miRNA:   3'- -UGGGGUC-GAgUCCuUGCCUGUUGUGu -5'
18809 5' -55.3 NC_004683.1 + 48746 0.67 0.609841
Target:  5'- gACCCCAcuGCUugaaCAGGAACGG-C-ACACc -3'
miRNA:   3'- -UGGGGU--CGA----GUCCUUGCCuGuUGUGu -5'
18809 5' -55.3 NC_004683.1 + 26586 0.68 0.598811
Target:  5'- cACUCCAGCUgCGGGu-CGGACAuCAg- -3'
miRNA:   3'- -UGGGGUCGA-GUCCuuGCCUGUuGUgu -5'
18809 5' -55.3 NC_004683.1 + 20298 0.68 0.58781
Target:  5'- -aCCCGGC-CGGGGcggcgACGGcgGCAGCGCGu -3'
miRNA:   3'- ugGGGUCGaGUCCU-----UGCC--UGUUGUGU- -5'
18809 5' -55.3 NC_004683.1 + 15092 0.69 0.543186
Target:  5'- cACCCCAGCaUCGGugcgcaaGAucgccGCGGGCGACAa- -3'
miRNA:   3'- -UGGGGUCG-AGUC-------CU-----UGCCUGUUGUgu -5'
18809 5' -55.3 NC_004683.1 + 13359 0.69 0.512301
Target:  5'- cCCCCAGuCUCcGGuGGCGG-CGGCACGc -3'
miRNA:   3'- uGGGGUC-GAGuCC-UUGCCuGUUGUGU- -5'
18809 5' -55.3 NC_004683.1 + 38963 0.69 0.490395
Target:  5'- uCCCCAGCUCAucGGGAgucgcguucaacuUGGACGugACc -3'
miRNA:   3'- uGGGGUCGAGU--CCUU-------------GCCUGUugUGu -5'
18809 5' -55.3 NC_004683.1 + 31970 0.7 0.475018
Target:  5'- gGCCCCG--UCAGGAucgggguaccaacccGCGGGCGGCugAg -3'
miRNA:   3'- -UGGGGUcgAGUCCU---------------UGCCUGUUGugU- -5'
18809 5' -55.3 NC_004683.1 + 37803 0.7 0.470958
Target:  5'- cCCCCuGCgcgaguGGAAgGGGCAGCGCGc -3'
miRNA:   3'- uGGGGuCGagu---CCUUgCCUGUUGUGU- -5'
18809 5' -55.3 NC_004683.1 + 16942 0.7 0.470958
Target:  5'- -gCCCGGCUCGGGcGCGacGACGAuCGCGu -3'
miRNA:   3'- ugGGGUCGAGUCCuUGC--CUGUU-GUGU- -5'
18809 5' -55.3 NC_004683.1 + 13026 0.7 0.45093
Target:  5'- gGCCCCGGCgacuUCcGGGugGGAuuCAACGCc -3'
miRNA:   3'- -UGGGGUCG----AGuCCUugCCU--GUUGUGu -5'
18809 5' -55.3 NC_004683.1 + 37112 0.71 0.393812
Target:  5'- uACCCCaaGGggCAGcccGAGCGGGCGACGCGg -3'
miRNA:   3'- -UGGGG--UCgaGUC---CUUGCCUGUUGUGU- -5'
18809 5' -55.3 NC_004683.1 + 51719 0.76 0.20692
Target:  5'- aACCCCggcagcgcgaccgcgGGCUCGGGGGCGGGCuugauCGCGu -3'
miRNA:   3'- -UGGGG---------------UCGAGUCCUUGCCUGuu---GUGU- -5'
18809 5' -55.3 NC_004683.1 + 36116 0.99 0.004869
Target:  5'- aACCCCAGCUCAGGAACGGACAAC-CAc -3'
miRNA:   3'- -UGGGGUCGAGUCCUUGCCUGUUGuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.