miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18812 3' -58.3 NC_004683.1 + 52351 0.66 0.549036
Target:  5'- uUCCGGUGUa--GGCGUCGagcuCGUGCGc -3'
miRNA:   3'- uAGGCCGCAaagCCGCGGC----GCAUGUu -5'
18812 3' -58.3 NC_004683.1 + 38042 0.66 0.538417
Target:  5'- uGUCCGcuUGUgcacgGGCGCCGCGUGCc- -3'
miRNA:   3'- -UAGGCc-GCAaag--CCGCGGCGCAUGuu -5'
18812 3' -58.3 NC_004683.1 + 27053 0.66 0.527868
Target:  5'- -gCCGGCcugccCGGCGCucaCGCGUACGc -3'
miRNA:   3'- uaGGCCGcaaa-GCCGCG---GCGCAUGUu -5'
18812 3' -58.3 NC_004683.1 + 43466 0.66 0.517397
Target:  5'- -cCUGGCGguugCGGCGCCGCc----- -3'
miRNA:   3'- uaGGCCGCaaa-GCCGCGGCGcauguu -5'
18812 3' -58.3 NC_004683.1 + 28043 0.66 0.517397
Target:  5'- uUCgGGCGagacaUUGGCGCCGCccgGCGAg -3'
miRNA:   3'- uAGgCCGCaa---AGCCGCGGCGca-UGUU- -5'
18812 3' -58.3 NC_004683.1 + 39620 0.66 0.517397
Target:  5'- uUCCGGgGUg--GGCGCCGcCGgggugGCGAc -3'
miRNA:   3'- uAGGCCgCAaagCCGCGGC-GCa----UGUU- -5'
18812 3' -58.3 NC_004683.1 + 6190 0.66 0.50701
Target:  5'- -gCCGGCGg-UUGGUGCCGaacagGUGCGGg -3'
miRNA:   3'- uaGGCCGCaaAGCCGCGGCg----CAUGUU- -5'
18812 3' -58.3 NC_004683.1 + 5833 0.66 0.496713
Target:  5'- gAUCuCGGCGg--CGGUGCcCGCGaGCGc -3'
miRNA:   3'- -UAG-GCCGCaaaGCCGCG-GCGCaUGUu -5'
18812 3' -58.3 NC_004683.1 + 18256 0.66 0.496713
Target:  5'- -aUCGGCaaggCGGUGCCcgGCGUGCAGa -3'
miRNA:   3'- uaGGCCGcaaaGCCGCGG--CGCAUGUU- -5'
18812 3' -58.3 NC_004683.1 + 5488 0.66 0.496713
Target:  5'- --aCGGCGUguccUCGGCGgC-CGUGCAGu -3'
miRNA:   3'- uagGCCGCAa---AGCCGCgGcGCAUGUU- -5'
18812 3' -58.3 NC_004683.1 + 52340 0.66 0.493642
Target:  5'- uUCCGGCG-UUCGGCgguacucgcccuggGCCGgGU-CAAc -3'
miRNA:   3'- uAGGCCGCaAAGCCG--------------CGGCgCAuGUU- -5'
18812 3' -58.3 NC_004683.1 + 30869 0.67 0.47641
Target:  5'- --aCGGCGUUcCGG-GCgGCGUGCGc -3'
miRNA:   3'- uagGCCGCAAaGCCgCGgCGCAUGUu -5'
18812 3' -58.3 NC_004683.1 + 3198 0.67 0.47641
Target:  5'- -aUCGGCa--UCGGCGcCCGgGUACAGa -3'
miRNA:   3'- uaGGCCGcaaAGCCGC-GGCgCAUGUU- -5'
18812 3' -58.3 NC_004683.1 + 13816 0.67 0.475405
Target:  5'- -cCCGGCGgugUUUGGCagcgcagGCCGCGcaccgGCGAa -3'
miRNA:   3'- uaGGCCGCa--AAGCCG-------CGGCGCa----UGUU- -5'
18812 3' -58.3 NC_004683.1 + 45796 0.67 0.466414
Target:  5'- -cCCGGCGUggaggUGcGCGUCGCGU-CGAa -3'
miRNA:   3'- uaGGCCGCAaa---GC-CGCGGCGCAuGUU- -5'
18812 3' -58.3 NC_004683.1 + 8171 0.67 0.456527
Target:  5'- -cUCGGgGUcgUCGGCGCCGuCGaGCGGg -3'
miRNA:   3'- uaGGCCgCAa-AGCCGCGGC-GCaUGUU- -5'
18812 3' -58.3 NC_004683.1 + 45535 0.68 0.399718
Target:  5'- --aCGGCagcagCGGCGCCGCG-ACAAc -3'
miRNA:   3'- uagGCCGcaaa-GCCGCGGCGCaUGUU- -5'
18812 3' -58.3 NC_004683.1 + 18660 0.69 0.347632
Target:  5'- -cCCGGCGaccUCGGUGCgGCGUuucaGCAGc -3'
miRNA:   3'- uaGGCCGCaa-AGCCGCGgCGCA----UGUU- -5'
18812 3' -58.3 NC_004683.1 + 20229 0.69 0.347632
Target:  5'- -gCUGGCGcagUCGGUGCCGgGUAUc- -3'
miRNA:   3'- uaGGCCGCaa-AGCCGCGGCgCAUGuu -5'
18812 3' -58.3 NC_004683.1 + 3587 0.69 0.339437
Target:  5'- -cCCGGCGUguccgcgUCGGCGUCgaGCGaUACAc -3'
miRNA:   3'- uaGGCCGCAa------AGCCGCGG--CGC-AUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.