miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18813 3' -51.2 NC_004683.1 + 48021 0.66 0.928357
Target:  5'- ---cUGCAgccGAUGAGGUGGCGcCGGc -3'
miRNA:   3'- gccuACGUaguCUACUCUACUGC-GCC- -5'
18813 3' -51.2 NC_004683.1 + 24283 0.66 0.922461
Target:  5'- cCGG--GCGUCGGAUGAGccGAgcuugaGCGGc -3'
miRNA:   3'- -GCCuaCGUAGUCUACUCuaCUg-----CGCC- -5'
18813 3' -51.2 NC_004683.1 + 2702 0.66 0.916278
Target:  5'- gCGGAUGCGgcccGAUuGGGUcGACGUGGu -3'
miRNA:   3'- -GCCUACGUagu-CUAcUCUA-CUGCGCC- -5'
18813 3' -51.2 NC_004683.1 + 34576 0.66 0.916278
Target:  5'- cCGGAguugagGCuGUCGacGGUGAGAacaccaugGACGCGGu -3'
miRNA:   3'- -GCCUa-----CG-UAGU--CUACUCUa-------CUGCGCC- -5'
18813 3' -51.2 NC_004683.1 + 17257 0.66 0.916278
Target:  5'- gGGGUGCAUCGGGcccaUGucGGAgcGGCGCuGGu -3'
miRNA:   3'- gCCUACGUAGUCU----AC--UCUa-CUGCG-CC- -5'
18813 3' -51.2 NC_004683.1 + 53920 0.66 0.909811
Target:  5'- gGGGUGCAcgAGGUGGGGcagauucuCGCGGa -3'
miRNA:   3'- gCCUACGUagUCUACUCUacu-----GCGCC- -5'
18813 3' -51.2 NC_004683.1 + 5503 0.66 0.909148
Target:  5'- aCGGAUGUcguUCAGGgauccguugGAGGUGAugaucacCGUGGg -3'
miRNA:   3'- -GCCUACGu--AGUCUa--------CUCUACU-------GCGCC- -5'
18813 3' -51.2 NC_004683.1 + 13124 0.67 0.881147
Target:  5'- cCGGAgggGCAUCGGcgGGaccggugccGAUGACcCGGc -3'
miRNA:   3'- -GCCUa--CGUAGUCuaCU---------CUACUGcGCC- -5'
18813 3' -51.2 NC_004683.1 + 12160 0.68 0.848254
Target:  5'- cCGGGgccGCGcUCAGGUGggcggcaggGGGUGGCGgGGg -3'
miRNA:   3'- -GCCUa--CGU-AGUCUAC---------UCUACUGCgCC- -5'
18813 3' -51.2 NC_004683.1 + 40215 0.69 0.801937
Target:  5'- uGGAUcGCAUgCAGAuUGGcGAUGGuCGCGGc -3'
miRNA:   3'- gCCUA-CGUA-GUCU-ACU-CUACU-GCGCC- -5'
18813 3' -51.2 NC_004683.1 + 50496 0.7 0.740426
Target:  5'- gCGGAUcGCGUCGGuuucAUGGGAc-GCGCGGc -3'
miRNA:   3'- -GCCUA-CGUAGUC----UACUCUacUGCGCC- -5'
18813 3' -51.2 NC_004683.1 + 10407 0.72 0.60772
Target:  5'- aCGGGUGCGUUcucuGAUGGG---GCGCGGg -3'
miRNA:   3'- -GCCUACGUAGu---CUACUCuacUGCGCC- -5'
18813 3' -51.2 NC_004683.1 + 37592 1.12 0.001871
Target:  5'- uCGGAUGCAUCAGAUGAGAUGACGCGGg -3'
miRNA:   3'- -GCCUACGUAGUCUACUCUACUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.