miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18817 3' -56 NC_004683.1 + 56796 0.66 0.705128
Target:  5'- uGAUGCgCGcCUCGUCGGGgcucaguccguucUCgaugcACCGCCa -3'
miRNA:   3'- -CUAUGaGC-GAGUAGCCC-------------AG-----UGGCGGc -5'
18817 3' -56 NC_004683.1 + 3843 0.66 0.695508
Target:  5'- --cGgUCGUUCcgCGaGUCGCCGCCc -3'
miRNA:   3'- cuaUgAGCGAGuaGCcCAGUGGCGGc -5'
18817 3' -56 NC_004683.1 + 33831 0.66 0.695508
Target:  5'- aGAUGCUCugcgaGCUCG-CGcGGUCGCCGggaCCa -3'
miRNA:   3'- -CUAUGAG-----CGAGUaGC-CCAGUGGC---GGc -5'
18817 3' -56 NC_004683.1 + 20493 0.66 0.684762
Target:  5'- nGGUGC-CGC-CGUuggccgcccCGGGUgCGCCGCCa -3'
miRNA:   3'- -CUAUGaGCGaGUA---------GCCCA-GUGGCGGc -5'
18817 3' -56 NC_004683.1 + 46093 0.67 0.641391
Target:  5'- --gGC-CGCcgCGUCGGGcagCACuCGCCGa -3'
miRNA:   3'- cuaUGaGCGa-GUAGCCCa--GUG-GCGGC- -5'
18817 3' -56 NC_004683.1 + 5833 0.67 0.641391
Target:  5'- --aGCUCGC-CG-CGcGG-CACCGCCGc -3'
miRNA:   3'- cuaUGAGCGaGUaGC-CCaGUGGCGGC- -5'
18817 3' -56 NC_004683.1 + 20530 0.67 0.620704
Target:  5'- --cGCUCGCcggcCAUCGGcgcgguggccccugCACCGCCGg -3'
miRNA:   3'- cuaUGAGCGa---GUAGCCca------------GUGGCGGC- -5'
18817 3' -56 NC_004683.1 + 3033 0.67 0.608739
Target:  5'- uGAUGCUUGCUCAUCGccuGGUCGgcacgaaucUCGCg- -3'
miRNA:   3'- -CUAUGAGCGAGUAGC---CCAGU---------GGCGgc -5'
18817 3' -56 NC_004683.1 + 51937 0.68 0.597882
Target:  5'- uGGUGCa-GCUCGagCGcGGUCGgCCGCCGu -3'
miRNA:   3'- -CUAUGagCGAGUa-GC-CCAGU-GGCGGC- -5'
18817 3' -56 NC_004683.1 + 10027 0.68 0.576263
Target:  5'- --aGCccCGCUCGUCacGGUCGCCGCgGu -3'
miRNA:   3'- cuaUGa-GCGAGUAGc-CCAGUGGCGgC- -5'
18817 3' -56 NC_004683.1 + 5774 0.68 0.544191
Target:  5'- cGGUGC-CGgUCGUgaGGGUCACgGCCu -3'
miRNA:   3'- -CUAUGaGCgAGUAg-CCCAGUGgCGGc -5'
18817 3' -56 NC_004683.1 + 46402 0.69 0.533625
Target:  5'- -cUGCcCGCaCGUCGGGcaCACCGCCu -3'
miRNA:   3'- cuAUGaGCGaGUAGCCCa-GUGGCGGc -5'
18817 3' -56 NC_004683.1 + 13243 0.69 0.512721
Target:  5'- uGUACcCGUcgaccgCAUCGGcGUCGCCGUCGa -3'
miRNA:   3'- cUAUGaGCGa-----GUAGCC-CAGUGGCGGC- -5'
18817 3' -56 NC_004683.1 + 42709 0.69 0.502396
Target:  5'- cGAU-CUCGUcgcgggcgUCGUCGcGGUCGCCGaCCa -3'
miRNA:   3'- -CUAuGAGCG--------AGUAGC-CCAGUGGC-GGc -5'
18817 3' -56 NC_004683.1 + 14311 0.69 0.492162
Target:  5'- --aGCUUGCggCAgugcugCGGGUCGCgGCCa -3'
miRNA:   3'- cuaUGAGCGa-GUa-----GCCCAGUGgCGGc -5'
18817 3' -56 NC_004683.1 + 5747 0.73 0.31261
Target:  5'- --cACcgCGCUCG-CGGG-CACCGCCGc -3'
miRNA:   3'- cuaUGa-GCGAGUaGCCCaGUGGCGGC- -5'
18817 3' -56 NC_004683.1 + 25728 0.78 0.158099
Target:  5'- -cUGCUCGCcgcgucgcagcuguUCAUCGGGcCGCUGCCGu -3'
miRNA:   3'- cuAUGAGCG--------------AGUAGCCCaGUGGCGGC- -5'
18817 3' -56 NC_004683.1 + 41919 0.8 0.117834
Target:  5'- --cGCUUGCUCAuUCGGG-CACCGCCu -3'
miRNA:   3'- cuaUGAGCGAGU-AGCCCaGUGGCGGc -5'
18817 3' -56 NC_004683.1 + 40406 1.08 0.001132
Target:  5'- aGAUACUCGCUCAUCGGGUCACCGCCGc -3'
miRNA:   3'- -CUAUGAGCGAGUAGCCCAGUGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.