miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18817 5' -58.1 NC_004683.1 + 40865 0.66 0.580928
Target:  5'- gUCGGCGAgcgcGUCGGuCGCgGCGGUcaccgcuucgUCGUa -3'
miRNA:   3'- gAGCCGCUa---CGGUC-GCG-CGUCA----------AGCA- -5'
18817 5' -58.1 NC_004683.1 + 51769 0.66 0.570222
Target:  5'- gCUCGGC--UGCCucgaaccgcGGCGUGCGGUUUc- -3'
miRNA:   3'- -GAGCCGcuACGG---------UCGCGCGUCAAGca -5'
18817 5' -58.1 NC_004683.1 + 5249 0.66 0.559564
Target:  5'- uCUUGGUGgcGgCGGCGCGCAcGUugUCGc -3'
miRNA:   3'- -GAGCCGCuaCgGUCGCGCGU-CA--AGCa -5'
18817 5' -58.1 NC_004683.1 + 34111 0.66 0.559564
Target:  5'- gUCGGCG-UGCUGGuCGCGUAG--CGUg -3'
miRNA:   3'- gAGCCGCuACGGUC-GCGCGUCaaGCA- -5'
18817 5' -58.1 NC_004683.1 + 56153 0.66 0.559564
Target:  5'- ---uGCGGUGCCAGCGC-CAGacgCGg -3'
miRNA:   3'- gagcCGCUACGGUCGCGcGUCaa-GCa -5'
18817 5' -58.1 NC_004683.1 + 12506 0.66 0.538426
Target:  5'- uUCGGCcaucguGAccUGCUGGCGCGCGGUg--- -3'
miRNA:   3'- gAGCCG------CU--ACGGUCGCGCGUCAagca -5'
18817 5' -58.1 NC_004683.1 + 2481 0.66 0.538426
Target:  5'- uUCGcGUGcAUGCUGGUGCGgCAGUUgGUg -3'
miRNA:   3'- gAGC-CGC-UACGGUCGCGC-GUCAAgCA- -5'
18817 5' -58.1 NC_004683.1 + 5731 0.66 0.527958
Target:  5'- uUCGGCGAacagCAGCGCGaCGGUcUCGg -3'
miRNA:   3'- gAGCCGCUacg-GUCGCGC-GUCA-AGCa -5'
18817 5' -58.1 NC_004683.1 + 21754 0.66 0.527958
Target:  5'- -cCGGUGAUGau-GCGCGCAGUccaCGg -3'
miRNA:   3'- gaGCCGCUACgguCGCGCGUCAa--GCa -5'
18817 5' -58.1 NC_004683.1 + 5911 0.67 0.517567
Target:  5'- -gCGGCGGUGCC-GCGCgGCgAGcugcUCGUa -3'
miRNA:   3'- gaGCCGCUACGGuCGCG-CG-UCa---AGCA- -5'
18817 5' -58.1 NC_004683.1 + 431 0.67 0.517567
Target:  5'- --aGGCGGUgGCUGGCGCgGCGG-UCGa -3'
miRNA:   3'- gagCCGCUA-CGGUCGCG-CGUCaAGCa -5'
18817 5' -58.1 NC_004683.1 + 53679 0.67 0.517567
Target:  5'- gCUCGGCGGcgaagacgcgGCCGGCGgUGCGGccggCGUc -3'
miRNA:   3'- -GAGCCGCUa---------CGGUCGC-GCGUCaa--GCA- -5'
18817 5' -58.1 NC_004683.1 + 18265 0.67 0.507259
Target:  5'- -aCGGCGAUGuCCGGCGacgaGcCGGUgacCGUg -3'
miRNA:   3'- gaGCCGCUAC-GGUCGCg---C-GUCAa--GCA- -5'
18817 5' -58.1 NC_004683.1 + 51823 0.67 0.507259
Target:  5'- aCUCGGCGAgGgCGGCGCgGCAcuggUCGc -3'
miRNA:   3'- -GAGCCGCUaCgGUCGCG-CGUca--AGCa -5'
18817 5' -58.1 NC_004683.1 + 52861 0.67 0.497039
Target:  5'- cCUCGGCGAg--CAGCGCcucuuGCAGUgucUCGa -3'
miRNA:   3'- -GAGCCGCUacgGUCGCG-----CGUCA---AGCa -5'
18817 5' -58.1 NC_004683.1 + 12711 0.67 0.486912
Target:  5'- cCUCGGCauccUCGGCGCGCGGggCGc -3'
miRNA:   3'- -GAGCCGcuacGGUCGCGCGUCaaGCa -5'
18817 5' -58.1 NC_004683.1 + 44820 0.67 0.46696
Target:  5'- uCUCGGCGAcgagcuUGUCGGCcucgGCGUAGUgguaCGUc -3'
miRNA:   3'- -GAGCCGCU------ACGGUCG----CGCGUCAa---GCA- -5'
18817 5' -58.1 NC_004683.1 + 13948 0.67 0.46696
Target:  5'- -cCGcGUGAUGUCAGCGCcggcGCGGUccUCGg -3'
miRNA:   3'- gaGC-CGCUACGGUCGCG----CGUCA--AGCa -5'
18817 5' -58.1 NC_004683.1 + 10580 0.68 0.457143
Target:  5'- cCUCGGCGcgaaGCCGGCcCGCAGcaUCGc -3'
miRNA:   3'- -GAGCCGCua--CGGUCGcGCGUCa-AGCa -5'
18817 5' -58.1 NC_004683.1 + 56403 0.68 0.44167
Target:  5'- -aCGGUGGUGUgcauggcguaggcgaCGGCGUGCAGUgugCGg -3'
miRNA:   3'- gaGCCGCUACG---------------GUCGCGCGUCAa--GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.