Results 81 - 84 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18818 | 3' | -63.3 | NC_004683.1 | + | 12657 | 0.77 | 0.055714 |
Target: 5'- -gGGCC-CGCUGUCGGCGAucaGCGCGg- -3' miRNA: 3'- agCCGGaGCGGCAGCCGCU---CGCGCag -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 51588 | 0.78 | 0.045976 |
Target: 5'- gUCGccgauGCCgaucgCGCgGUCGGUGGGCGCGUCg -3' miRNA: 3'- -AGC-----CGGa----GCGgCAGCCGCUCGCGCAG- -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 44804 | 0.9 | 0.005836 |
Target: 5'- gUCGGCCUCGgcguagugguaCGUCGGCGGGCGCGUCa -3' miRNA: 3'- -AGCCGGAGCg----------GCAGCCGCUCGCGCAG- -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 40877 | 1.09 | 0.000194 |
Target: 5'- cUCGGCCUCGCCGUCGGCGAGCGCGUCg -3' miRNA: 3'- -AGCCGGAGCGGCAGCCGCUCGCGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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