miRNA display CGI


Results 41 - 60 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18818 3' -63.3 NC_004683.1 + 26291 0.69 0.214269
Target:  5'- uUCGGCggcguuCUCGaCCuggCgGGCGAGCGCGUUg -3'
miRNA:   3'- -AGCCG------GAGC-GGca-G-CCGCUCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 26329 0.69 0.225174
Target:  5'- aUCGaCCggCGCUGUCGGCG-GUGCGa- -3'
miRNA:   3'- -AGCcGGa-GCGGCAGCCGCuCGCGCag -5'
18818 3' -63.3 NC_004683.1 + 28641 0.66 0.361185
Target:  5'- aCGGCCgagacuuggCGgCGcUCGGCGuGC-CGUCu -3'
miRNA:   3'- aGCCGGa--------GCgGC-AGCCGCuCGcGCAG- -5'
18818 3' -63.3 NC_004683.1 + 31534 0.66 0.361185
Target:  5'- gUCGGCgUCGgccaCGcCGGCGAGCuCGg- -3'
miRNA:   3'- -AGCCGgAGCg---GCaGCCGCUCGcGCag -5'
18818 3' -63.3 NC_004683.1 + 31584 0.69 0.214269
Target:  5'- gUCGGCCUaCGCCugGUCccaGGCGAGCGa--- -3'
miRNA:   3'- -AGCCGGA-GCGG--CAG---CCGCUCGCgcag -5'
18818 3' -63.3 NC_004683.1 + 32154 0.66 0.361185
Target:  5'- cUCGGCC-CGuuGUUuaGGCGcucagggcAGCGCGg- -3'
miRNA:   3'- -AGCCGGaGCggCAG--CCGC--------UCGCGCag -5'
18818 3' -63.3 NC_004683.1 + 32954 0.69 0.214269
Target:  5'- aUUGGCCUCGauCCgGUCGaCGAGUGCGg- -3'
miRNA:   3'- -AGCCGGAGC--GG-CAGCcGCUCGCGCag -5'
18818 3' -63.3 NC_004683.1 + 33321 0.74 0.101056
Target:  5'- gCGaCCUgGCCGcggaucUgGGCGAGCGCGUCg -3'
miRNA:   3'- aGCcGGAgCGGC------AgCCGCUCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 36114 0.66 0.353184
Target:  5'- gUCGGgcgaUCUCGUCGaUCGGCGAuCGCuauGUCg -3'
miRNA:   3'- -AGCC----GGAGCGGC-AGCCGCUcGCG---CAG- -5'
18818 3' -63.3 NC_004683.1 + 37850 0.68 0.260731
Target:  5'- gCGGCCgccugggUGUCGUCGGCGugaaGGUGaGUCg -3'
miRNA:   3'- aGCCGGa------GCGGCAGCCGC----UCGCgCAG- -5'
18818 3' -63.3 NC_004683.1 + 39243 0.72 0.142427
Target:  5'- cUCGGCCUUGgCGaCGaGCG-GUGCGUCc -3'
miRNA:   3'- -AGCCGGAGCgGCaGC-CGCuCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 39956 0.71 0.15003
Target:  5'- gUUGGCgCUCGCCGgcuGGUGAcuCGCGUCg -3'
miRNA:   3'- -AGCCG-GAGCGGCag-CCGCUc-GCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 40237 0.66 0.369312
Target:  5'- -aGGCCcgCGCCGagcugcaGGC--GCGCGUCg -3'
miRNA:   3'- agCCGGa-GCGGCag-----CCGcuCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 40380 0.67 0.307842
Target:  5'- gCGGCgaUGCCcUCGGCGAugccaGCGCG-Ca -3'
miRNA:   3'- aGCCGgaGCGGcAGCCGCU-----CGCGCaG- -5'
18818 3' -63.3 NC_004683.1 + 40599 0.66 0.33756
Target:  5'- gUGGCC-CGCCGagGG-GGGCGCcGUg -3'
miRNA:   3'- aGCCGGaGCGGCagCCgCUCGCG-CAg -5'
18818 3' -63.3 NC_004683.1 + 40877 1.09 0.000194
Target:  5'- cUCGGCCUCGCCGUCGGCGAGCGCGUCg -3'
miRNA:   3'- -AGCCGGAGCGGCAGCCGCUCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 41033 0.68 0.254502
Target:  5'- gUCGGCgUgGCCGacgggcaaCGGCG-GCGCGgUCa -3'
miRNA:   3'- -AGCCGgAgCGGCa-------GCCGCuCGCGC-AG- -5'
18818 3' -63.3 NC_004683.1 + 41276 0.74 0.090793
Target:  5'- gCGGCCuUCGCCGcgUCGGCGGGUGUc-- -3'
miRNA:   3'- aGCCGG-AGCGGC--AGCCGCUCGCGcag -5'
18818 3' -63.3 NC_004683.1 + 42636 0.72 0.131683
Target:  5'- cUCGGCCUCGCucauggugugCGUCGcGCG-GCGCcacucGUCg -3'
miRNA:   3'- -AGCCGGAGCG----------GCAGC-CGCuCGCG-----CAG- -5'
18818 3' -63.3 NC_004683.1 + 42721 0.68 0.248395
Target:  5'- aUCGGCggcCGCCGaucUCGucGCGGGCGuCGUCg -3'
miRNA:   3'- -AGCCGga-GCGGC---AGC--CGCUCGC-GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.