Results 61 - 80 of 84 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18818 | 3' | -63.3 | NC_004683.1 | + | 42728 | 0.7 | 0.193817 |
Target: 5'- -gGGgCUCGCUGUCGGUauccGGCGCGa- -3' miRNA: 3'- agCCgGAGCGGCAGCCGc---UCGCGCag -5' |
|||||||
18818 | 3' | -63.3 | NC_004683.1 | + | 43159 | 0.74 | 0.095795 |
Target: 5'- cUCGGCCUCGCCGUCaGGauuggcgaagauCGGGCcgGCuGUCg -3' miRNA: 3'- -AGCCGGAGCGGCAG-CC------------GCUCG--CG-CAG- -5' |
|||||||
18818 | 3' | -63.3 | NC_004683.1 | + | 43191 | 0.66 | 0.329939 |
Target: 5'- cCGGUCUCGggGUCGGUGuaguacAGCGCGa- -3' miRNA: 3'- aGCCGGAGCggCAGCCGC------UCGCGCag -5' |
|||||||
18818 | 3' | -63.3 | NC_004683.1 | + | 43849 | 0.68 | 0.254502 |
Target: 5'- cUCGGUCUCGagcCCGgugucaaCGGCGAGUGCu-- -3' miRNA: 3'- -AGCCGGAGC---GGCa------GCCGCUCGCGcag -5' |
|||||||
18818 | 3' | -63.3 | NC_004683.1 | + | 44359 | 0.71 | 0.158 |
Target: 5'- gUCGGCgcggaUCGCCG-CGuCGAGCcGCGUCg -3' miRNA: 3'- -AGCCGg----AGCGGCaGCcGCUCG-CGCAG- -5' |
|||||||
18818 | 3' | -63.3 | NC_004683.1 | + | 44455 | 0.66 | 0.361185 |
Target: 5'- cUCGGCgauCUCGCCGUCGauguaGUcGGC-CGUCg -3' miRNA: 3'- -AGCCG---GAGCGGCAGC-----CGcUCGcGCAG- -5' |
|||||||
18818 | 3' | -63.3 | NC_004683.1 | + | 44545 | 0.67 | 0.307842 |
Target: 5'- aUUGGCCaUCuGCaCGUCgGGCGccGGCGCGg- -3' miRNA: 3'- -AGCCGG-AG-CG-GCAG-CCGC--UCGCGCag -5' |
|||||||
18818 | 3' | -63.3 | NC_004683.1 | + | 44679 | 0.71 | 0.170673 |
Target: 5'- uUC-GCCUCGUCGaacgugaggUCGGCGGcGCGCGUg -3' miRNA: 3'- -AGcCGGAGCGGC---------AGCCGCU-CGCGCAg -5' |
|||||||
18818 | 3' | -63.3 | NC_004683.1 | + | 44804 | 0.9 | 0.005836 |
Target: 5'- gUCGGCCUCGgcguagugguaCGUCGGCGGGCGCGUCa -3' miRNA: 3'- -AGCCGGAGCg----------GCAGCCGCUCGCGCAG- -5' |
|||||||
18818 | 3' | -63.3 | NC_004683.1 | + | 44939 | 0.72 | 0.124941 |
Target: 5'- cUCGGCCUCcagGCCGggccaccaCGGCGAuuGCGCGa- -3' miRNA: 3'- -AGCCGGAG---CGGCa-------GCCGCU--CGCGCag -5' |
|||||||
18818 | 3' | -63.3 | NC_004683.1 | + | 45575 | 0.69 | 0.236546 |
Target: 5'- gUGGCgacgaGCCgGUCGGUgcgGGGCGCGUCg -3' miRNA: 3'- aGCCGgag--CGG-CAGCCG---CUCGCGCAG- -5' |
|||||||
18818 | 3' | -63.3 | NC_004683.1 | + | 46005 | 0.67 | 0.31508 |
Target: 5'- cCGGgCUCGCCcagagaauGUCGGUGcgcgggaaccGGCGCGg- -3' miRNA: 3'- aGCCgGAGCGG--------CAGCCGC----------UCGCGCag -5' |
|||||||
18818 | 3' | -63.3 | NC_004683.1 | + | 46408 | 0.66 | 0.361185 |
Target: 5'- gCGGaCCUgccCGCaCGUCGGgcacaccgccuCGGGCcGCGUCa -3' miRNA: 3'- aGCC-GGA---GCG-GCAGCC-----------GCUCG-CGCAG- -5' |
|||||||
18818 | 3' | -63.3 | NC_004683.1 | + | 46683 | 0.66 | 0.321703 |
Target: 5'- gCGGCCUUGCCGUCgcggcccucgaccGGCaccAGCaGCGg- -3' miRNA: 3'- aGCCGGAGCGGCAG-------------CCGc--UCG-CGCag -5' |
|||||||
18818 | 3' | -63.3 | NC_004683.1 | + | 48922 | 0.67 | 0.31508 |
Target: 5'- gCGGCCgUCGaguuCG-CGGCcAGCGCGUUu -3' miRNA: 3'- aGCCGG-AGCg---GCaGCCGcUCGCGCAG- -5' |
|||||||
18818 | 3' | -63.3 | NC_004683.1 | + | 50319 | 0.67 | 0.300732 |
Target: 5'- aCcGCCUCGUCGaugUCGGCcaagacuggcuuGAGCGUGUUg -3' miRNA: 3'- aGcCGGAGCGGC---AGCCG------------CUCGCGCAG- -5' |
|||||||
18818 | 3' | -63.3 | NC_004683.1 | + | 51588 | 0.78 | 0.045976 |
Target: 5'- gUCGccgauGCCgaucgCGCgGUCGGUGGGCGCGUCg -3' miRNA: 3'- -AGC-----CGGa----GCGgCAGCCGCUCGCGCAG- -5' |
|||||||
18818 | 3' | -63.3 | NC_004683.1 | + | 51669 | 0.68 | 0.248395 |
Target: 5'- cUCGGCCUgG-CGaCGGuCGAGCcCGUCg -3' miRNA: 3'- -AGCCGGAgCgGCaGCC-GCUCGcGCAG- -5' |
|||||||
18818 | 3' | -63.3 | NC_004683.1 | + | 51847 | 0.68 | 0.260731 |
Target: 5'- -gGGCCUCGCguuuggcggCGaaguacUCGGCGAGgGCGg- -3' miRNA: 3'- agCCGGAGCG---------GC------AGCCGCUCgCGCag -5' |
|||||||
18818 | 3' | -63.3 | NC_004683.1 | + | 52223 | 0.67 | 0.31508 |
Target: 5'- gUCGGUCgggucCGCC-UCGGCGAcccgggccgGCGCGg- -3' miRNA: 3'- -AGCCGGa----GCGGcAGCCGCU---------CGCGCag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home