Results 81 - 84 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18818 | 3' | -63.3 | NC_004683.1 | + | 2119 | 0.69 | 0.203821 |
Target: 5'- gUGGCCaUCGCCcugguggUGGCGGGCGUGg- -3' miRNA: 3'- aGCCGG-AGCGGca-----GCCGCUCGCGCag -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 1729 | 0.72 | 0.134121 |
Target: 5'- cUCGGCUUCGagGUCGGCGAcgaggugacaaacgGCGCGg- -3' miRNA: 3'- -AGCCGGAGCggCAGCCGCU--------------CGCGCag -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 861 | 0.66 | 0.353184 |
Target: 5'- --uGCCUCGCgUGUCGGCGucaucucGUGCGcCg -3' miRNA: 3'- agcCGGAGCG-GCAGCCGCu------CGCGCaG- -5' |
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18818 | 3' | -63.3 | NC_004683.1 | + | 391 | 0.66 | 0.353184 |
Target: 5'- cUGGCgUCGCUGUCGaaagagcuGCGGGCG-GUg -3' miRNA: 3'- aGCCGgAGCGGCAGC--------CGCUCGCgCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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