miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18818 3' -63.3 NC_004683.1 + 6628 0.68 0.24241
Target:  5'- cUCGGCCggCGCCuguGUgGuuGCGGGCGCGg- -3'
miRNA:   3'- -AGCCGGa-GCGG---CAgC--CGCUCGCGCag -5'
18818 3' -63.3 NC_004683.1 + 5911 0.69 0.236546
Target:  5'- gCGGCggUGCCGcgCGGCGAGCuGC-UCg -3'
miRNA:   3'- aGCCGgaGCGGCa-GCCGCUCG-CGcAG- -5'
18818 3' -63.3 NC_004683.1 + 5754 0.69 0.214269
Target:  5'- aCGGCCUCgagcucguccuuGCCuUCGGCGAacagcaGCGCGa- -3'
miRNA:   3'- aGCCGGAG------------CGGcAGCCGCU------CGCGCag -5'
18818 3' -63.3 NC_004683.1 + 12316 0.69 0.212143
Target:  5'- aUCGGCa-CGCCGggcgcucccgcccCGGCGGGCGUGg- -3'
miRNA:   3'- -AGCCGgaGCGGCa------------GCCGCUCGCGCag -5'
18818 3' -63.3 NC_004683.1 + 2615 0.67 0.307842
Target:  5'- aCGGCUUC-CCGUCGcGCaAGCGCu-- -3'
miRNA:   3'- aGCCGGAGcGGCAGC-CGcUCGCGcag -5'
18818 3' -63.3 NC_004683.1 + 41033 0.68 0.254502
Target:  5'- gUCGGCgUgGCCGacgggcaaCGGCG-GCGCGgUCa -3'
miRNA:   3'- -AGCCGgAgCGGCa-------GCCGCuCGCGC-AG- -5'
18818 3' -63.3 NC_004683.1 + 24235 0.69 0.230801
Target:  5'- gCGGCCUUGUgcagGUCGGCGAuCGCcUCg -3'
miRNA:   3'- aGCCGGAGCGg---CAGCCGCUcGCGcAG- -5'
18818 3' -63.3 NC_004683.1 + 8176 0.69 0.208989
Target:  5'- cCaGCCUCgggGUCGUCGGCGccgucgAGCGgGUCa -3'
miRNA:   3'- aGcCGGAG---CGGCAGCCGC------UCGCgCAG- -5'
18818 3' -63.3 NC_004683.1 + 42721 0.68 0.248395
Target:  5'- aUCGGCggcCGCCGaucUCGucGCGGGCGuCGUCg -3'
miRNA:   3'- -AGCCGga-GCGGC---AGC--CGCUCGC-GCAG- -5'
18818 3' -63.3 NC_004683.1 + 44679 0.71 0.170673
Target:  5'- uUC-GCCUCGUCGaacgugaggUCGGCGGcGCGCGUg -3'
miRNA:   3'- -AGcCGGAGCGGC---------AGCCGCU-CGCGCAg -5'
18818 3' -63.3 NC_004683.1 + 45575 0.69 0.236546
Target:  5'- gUGGCgacgaGCCgGUCGGUgcgGGGCGCGUCg -3'
miRNA:   3'- aGCCGgag--CGG-CAGCCG---CUCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 3366 0.68 0.24241
Target:  5'- gUCGGCCa-GgCGUCGGCGGGCcugccCGUa -3'
miRNA:   3'- -AGCCGGagCgGCAGCCGCUCGc----GCAg -5'
18818 3' -63.3 NC_004683.1 + 24759 0.69 0.219664
Target:  5'- aUGGCCUCGaugaCGUCGGgGuuGGUGCG-Ca -3'
miRNA:   3'- aGCCGGAGCg---GCAGCCgC--UCGCGCaG- -5'
18818 3' -63.3 NC_004683.1 + 9328 0.69 0.219664
Target:  5'- -gGGUCUUacgaGCCGUcgcCGGCcAGCGCGUCc -3'
miRNA:   3'- agCCGGAG----CGGCA---GCCGcUCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 31584 0.69 0.214269
Target:  5'- gUCGGCCUaCGCCugGUCccaGGCGAGCGa--- -3'
miRNA:   3'- -AGCCGGA-GCGG--CAG---CCGCUCGCgcag -5'
18818 3' -63.3 NC_004683.1 + 26291 0.69 0.214269
Target:  5'- uUCGGCggcguuCUCGaCCuggCgGGCGAGCGCGUUg -3'
miRNA:   3'- -AGCCG------GAGC-GGca-G-CCGCUCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 18200 0.66 0.369312
Target:  5'- gCGGUaggUGCCGgCGGCGAcCGCGaUCg -3'
miRNA:   3'- aGCCGga-GCGGCaGCCGCUcGCGC-AG- -5'
18818 3' -63.3 NC_004683.1 + 44545 0.67 0.307842
Target:  5'- aUUGGCCaUCuGCaCGUCgGGCGccGGCGCGg- -3'
miRNA:   3'- -AGCCGG-AG-CG-GCAG-CCGC--UCGCGCag -5'
18818 3' -63.3 NC_004683.1 + 6743 0.68 0.273562
Target:  5'- gCGGCg-CGCCG-CGGCcAGCacgGCGUCg -3'
miRNA:   3'- aGCCGgaGCGGCaGCCGcUCG---CGCAG- -5'
18818 3' -63.3 NC_004683.1 + 51847 0.68 0.260731
Target:  5'- -gGGCCUCGCguuuggcggCGaaguacUCGGCGAGgGCGg- -3'
miRNA:   3'- agCCGGAGCG---------GC------AGCCGCUCgCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.