miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18818 3' -63.3 NC_004683.1 + 19772 0.66 0.33756
Target:  5'- -aGGUUgugCGCCagugauugcagGUUGGCGAGCGCuUCg -3'
miRNA:   3'- agCCGGa--GCGG-----------CAGCCGCUCGCGcAG- -5'
18818 3' -63.3 NC_004683.1 + 56442 0.66 0.329939
Target:  5'- aUGGCCUuggugcUGUCGUgGGUGAGCagccCGUCg -3'
miRNA:   3'- aGCCGGA------GCGGCAgCCGCUCGc---GCAG- -5'
18818 3' -63.3 NC_004683.1 + 24465 0.66 0.329939
Target:  5'- gUGGCCUCGUCGaagacacCGGUGAuCGCGa- -3'
miRNA:   3'- aGCCGGAGCGGCa------GCCGCUcGCGCag -5'
18818 3' -63.3 NC_004683.1 + 43191 0.66 0.329939
Target:  5'- cCGGUCUCGggGUCGGUGuaguacAGCGCGa- -3'
miRNA:   3'- aGCCGGAGCggCAGCCGC------UCGCGCag -5'
18818 3' -63.3 NC_004683.1 + 13602 0.66 0.329939
Target:  5'- aUCGGCuaugcgggccagCUCGCCGgcaUCGGCGucuCGgGUCu -3'
miRNA:   3'- -AGCCG------------GAGCGGC---AGCCGCuc-GCgCAG- -5'
18818 3' -63.3 NC_004683.1 + 53713 0.66 0.322446
Target:  5'- gCGGCCagGUCG-CGGCGGGCcugaucGCGcCg -3'
miRNA:   3'- aGCCGGagCGGCaGCCGCUCG------CGCaG- -5'
18818 3' -63.3 NC_004683.1 + 46683 0.66 0.321703
Target:  5'- gCGGCCUUGCCGUCgcggcccucgaccGGCaccAGCaGCGg- -3'
miRNA:   3'- aGCCGGAGCGGCAG-------------CCGc--UCG-CGCag -5'
18818 3' -63.3 NC_004683.1 + 8553 0.67 0.31508
Target:  5'- cCGGCCugaUCGCCGU-GGCGuucCGCGa- -3'
miRNA:   3'- aGCCGG---AGCGGCAgCCGCuc-GCGCag -5'
18818 3' -63.3 NC_004683.1 + 52223 0.67 0.31508
Target:  5'- gUCGGUCgggucCGCC-UCGGCGAcccgggccgGCGCGg- -3'
miRNA:   3'- -AGCCGGa----GCGGcAGCCGCU---------CGCGCag -5'
18818 3' -63.3 NC_004683.1 + 46005 0.67 0.31508
Target:  5'- cCGGgCUCGCCcagagaauGUCGGUGcgcgggaaccGGCGCGg- -3'
miRNA:   3'- aGCCgGAGCGG--------CAGCCGC----------UCGCGCag -5'
18818 3' -63.3 NC_004683.1 + 48922 0.67 0.31508
Target:  5'- gCGGCCgUCGaguuCG-CGGCcAGCGCGUUu -3'
miRNA:   3'- aGCCGG-AGCg---GCaGCCGcUCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 44545 0.67 0.307842
Target:  5'- aUUGGCCaUCuGCaCGUCgGGCGccGGCGCGg- -3'
miRNA:   3'- -AGCCGG-AG-CG-GCAG-CCGC--UCGCGCag -5'
18818 3' -63.3 NC_004683.1 + 2615 0.67 0.307842
Target:  5'- aCGGCUUC-CCGUCGcGCaAGCGCu-- -3'
miRNA:   3'- aGCCGGAGcGGCAGC-CGcUCGCGcag -5'
18818 3' -63.3 NC_004683.1 + 40380 0.67 0.307842
Target:  5'- gCGGCgaUGCCcUCGGCGAugccaGCGCG-Ca -3'
miRNA:   3'- aGCCGgaGCGGcAGCCGCU-----CGCGCaG- -5'
18818 3' -63.3 NC_004683.1 + 50319 0.67 0.300732
Target:  5'- aCcGCCUCGUCGaugUCGGCcaagacuggcuuGAGCGUGUUg -3'
miRNA:   3'- aGcCGGAGCGGC---AGCCG------------CUCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 22698 0.67 0.286894
Target:  5'- aUCGGgCUCuaCGcCGGUucGAcGCGCGUCg -3'
miRNA:   3'- -AGCCgGAGcgGCaGCCG--CU-CGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 6743 0.68 0.273562
Target:  5'- gCGGCg-CGCCG-CGGCcAGCacgGCGUCg -3'
miRNA:   3'- aGCCGgaGCGGCaGCCGcUCG---CGCAG- -5'
18818 3' -63.3 NC_004683.1 + 55974 0.68 0.273562
Target:  5'- gUUGGCCUUGaauaCGgUGGCGAcGCGCGg- -3'
miRNA:   3'- -AGCCGGAGCg---GCaGCCGCU-CGCGCag -5'
18818 3' -63.3 NC_004683.1 + 24880 0.68 0.267084
Target:  5'- cUCGccGCCgUCGCCGaagaGGUgcucGAGCGCGUCc -3'
miRNA:   3'- -AGC--CGG-AGCGGCag--CCG----CUCGCGCAG- -5'
18818 3' -63.3 NC_004683.1 + 51847 0.68 0.260731
Target:  5'- -gGGCCUCGCguuuggcggCGaaguacUCGGCGAGgGCGg- -3'
miRNA:   3'- agCCGGAGCG---------GC------AGCCGCUCgCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.