miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18818 5' -54.4 NC_004683.1 + 19220 0.66 0.813428
Target:  5'- uCGGUcCACCGCaUC-UUGUAGGUGccGu -3'
miRNA:   3'- -GCCA-GUGGCGaAGcAGCAUCCACucC- -5'
18818 5' -54.4 NC_004683.1 + 18159 0.66 0.805032
Target:  5'- aGGUgGCCGUggugcccgccggggCGUCGuUAGG-GAGGc -3'
miRNA:   3'- gCCAgUGGCGaa------------GCAGC-AUCCaCUCC- -5'
18818 5' -54.4 NC_004683.1 + 25016 0.66 0.804091
Target:  5'- -aGUCGCCGCgggUCGUcaCGUuGGUGAu- -3'
miRNA:   3'- gcCAGUGGCGa--AGCA--GCAuCCACUcc -5'
18818 5' -54.4 NC_004683.1 + 39159 0.66 0.784901
Target:  5'- aGGacgCACCGC-UCGUCGccaAGGccGAGGc -3'
miRNA:   3'- gCCa--GUGGCGaAGCAGCa--UCCa-CUCC- -5'
18818 5' -54.4 NC_004683.1 + 55162 0.67 0.734411
Target:  5'- -cGUCGCCGUagCGgaaCG-AGGUGAGGc -3'
miRNA:   3'- gcCAGUGGCGaaGCa--GCaUCCACUCC- -5'
18818 5' -54.4 NC_004683.1 + 40472 0.67 0.734411
Target:  5'- aGGUCGa-GC-UCGUCG-AGGUcGAGGa -3'
miRNA:   3'- gCCAGUggCGaAGCAGCaUCCA-CUCC- -5'
18818 5' -54.4 NC_004683.1 + 56460 0.68 0.696432
Target:  5'- gCGGUgAUCGCacugUCGauggccuuggugcugUCGUGGGUGAGc -3'
miRNA:   3'- -GCCAgUGGCGa---AGC---------------AGCAUCCACUCc -5'
18818 5' -54.4 NC_004683.1 + 8687 0.69 0.638141
Target:  5'- aCGGU-GCCGUUcgCGUUGUGcGGUGAGa -3'
miRNA:   3'- -GCCAgUGGCGAa-GCAGCAU-CCACUCc -5'
18818 5' -54.4 NC_004683.1 + 33966 0.7 0.605588
Target:  5'- cCGGUCcCCGCUcgCGguggaccagcUCGUGGGUaAGGg -3'
miRNA:   3'- -GCCAGuGGCGAa-GC----------AGCAUCCAcUCC- -5'
18818 5' -54.4 NC_004683.1 + 16238 0.72 0.489526
Target:  5'- uGGUCcauGCCGCUUUcucguacgcccaGUCGUGGGUGucGa -3'
miRNA:   3'- gCCAG---UGGCGAAG------------CAGCAUCCACucC- -5'
18818 5' -54.4 NC_004683.1 + 3835 0.75 0.334429
Target:  5'- gCGGUugaaCACCGCgccguagcCGUCGaGGGUGAGGc -3'
miRNA:   3'- -GCCA----GUGGCGaa------GCAGCaUCCACUCC- -5'
18818 5' -54.4 NC_004683.1 + 19155 0.75 0.318713
Target:  5'- aGGcgCGCCGUcgguggCGUCGUGGGUGAGc -3'
miRNA:   3'- gCCa-GUGGCGaa----GCAGCAUCCACUCc -5'
18818 5' -54.4 NC_004683.1 + 40843 1.1 0.001406
Target:  5'- gCGGUCACCGCUUCGUCGUAGGUGAGGc -3'
miRNA:   3'- -GCCAGUGGCGAAGCAGCAUCCACUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.