Results 1 - 5 of 5 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18819 | 3' | -51.1 | NC_004683.1 | + | 40982 | 1.11 | 0.002021 |
Target: 5'- gGAUCCGGGGAUGUAGUAAGGCGAAUCg -3' miRNA: 3'- -CUAGGCCCCUACAUCAUUCCGCUUAG- -5' |
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18819 | 3' | -51.1 | NC_004683.1 | + | 54716 | 0.68 | 0.818644 |
Target: 5'- cGUUCGGGG-UGUGGc--GGCGAAUg -3' miRNA: 3'- cUAGGCCCCuACAUCauuCCGCUUAg -5' |
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18819 | 3' | -51.1 | NC_004683.1 | + | 11970 | 0.68 | 0.828108 |
Target: 5'- --cCCgGGGGGUGcUGGUGGGGCcgGAAUa -3' miRNA: 3'- cuaGG-CCCCUAC-AUCAUUCCG--CUUAg -5' |
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18819 | 3' | -51.1 | NC_004683.1 | + | 43190 | 0.67 | 0.871931 |
Target: 5'- cGGUCuCGGGGucgGUGUAGUAcAGcGCGAc-- -3' miRNA: 3'- -CUAG-GCCCC---UACAUCAU-UC-CGCUuag -5' |
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18819 | 3' | -51.1 | NC_004683.1 | + | 42462 | 0.68 | 0.837352 |
Target: 5'- uGGUCCGcGGAUG-AGU--GGUGGAUCg -3' miRNA: 3'- -CUAGGCcCCUACaUCAuuCCGCUUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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