miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18819 5' -60 NC_004683.1 + 31635 0.66 0.500598
Target:  5'- -cGAGUCGUcgGacccaaCCGaGCUCGCCgGCg -3'
miRNA:   3'- acCUCAGCGa-Cg-----GGCaUGAGCGGgCG- -5'
18819 5' -60 NC_004683.1 + 18127 0.66 0.500598
Target:  5'- gGGAG--GCUGCCCaGUGCau-CCCGCc -3'
miRNA:   3'- aCCUCagCGACGGG-CAUGagcGGGCG- -5'
18819 5' -60 NC_004683.1 + 48350 0.66 0.461342
Target:  5'- aUGGuGauUCGCUGCgCagccACUCGCCgGCg -3'
miRNA:   3'- -ACCuC--AGCGACGgGca--UGAGCGGgCG- -5'
18819 5' -60 NC_004683.1 + 45855 0.66 0.460381
Target:  5'- cGGGGaucucgaUCGCa-CCCGUACUCGaaCCGCc -3'
miRNA:   3'- aCCUC-------AGCGacGGGCAUGAGCg-GGCG- -5'
18819 5' -60 NC_004683.1 + 8830 0.67 0.442331
Target:  5'- aGGGGcCGUUGCCCucACcgaacgCGCCgGCg -3'
miRNA:   3'- aCCUCaGCGACGGGcaUGa-----GCGGgCG- -5'
18819 5' -60 NC_004683.1 + 53712 0.67 0.432993
Target:  5'- cGGccaGGUCGCggcggGCCUGa--UCGCgCCGCa -3'
miRNA:   3'- aCC---UCAGCGa----CGGGCaugAGCG-GGCG- -5'
18819 5' -60 NC_004683.1 + 6730 0.67 0.432993
Target:  5'- aUGGaAGUCGacgGCCCGgg--CGgCCGCg -3'
miRNA:   3'- -ACC-UCAGCga-CGGGCaugaGCgGGCG- -5'
18819 5' -60 NC_004683.1 + 4532 0.67 0.405685
Target:  5'- gUGGA-UCGCUGCgCGUcgucggACUCGgCCGg -3'
miRNA:   3'- -ACCUcAGCGACGgGCA------UGAGCgGGCg -5'
18819 5' -60 NC_004683.1 + 46452 0.67 0.405685
Target:  5'- uUGGAGcCGCUGuUCCGU-C-CGgCCGCc -3'
miRNA:   3'- -ACCUCaGCGAC-GGGCAuGaGCgGGCG- -5'
18819 5' -60 NC_004683.1 + 24065 0.68 0.397707
Target:  5'- gGGAG-CaGCUGUUCGgcccgcaggccaaggGCUgGCCCGCg -3'
miRNA:   3'- aCCUCaG-CGACGGGCa--------------UGAgCGGGCG- -5'
18819 5' -60 NC_004683.1 + 46388 0.68 0.396826
Target:  5'- gUGGGGcCGCUaccgcGCCCaGUACguguaccggUGCCCGUc -3'
miRNA:   3'- -ACCUCaGCGA-----CGGG-CAUGa--------GCGGGCG- -5'
18819 5' -60 NC_004683.1 + 46792 0.68 0.396826
Target:  5'- cGGAucgucagugcucGUCGCgucggugcGCCaCGUAC-CGCCCGUc -3'
miRNA:   3'- aCCU------------CAGCGa-------CGG-GCAUGaGCGGGCG- -5'
18819 5' -60 NC_004683.1 + 14723 0.68 0.379486
Target:  5'- aGGAgugGUCGCUGCCCGaggGCgCGgCCa- -3'
miRNA:   3'- aCCU---CAGCGACGGGCa--UGaGCgGGcg -5'
18819 5' -60 NC_004683.1 + 51000 0.68 0.362662
Target:  5'- aGGGGuucUCGuCUGCCCGaggGCUggaUGCCCGa -3'
miRNA:   3'- aCCUC---AGC-GACGGGCa--UGA---GCGGGCg -5'
18819 5' -60 NC_004683.1 + 11778 0.68 0.354446
Target:  5'- aGGAGUgGCUGgCCG-ACUCGUCg-- -3'
miRNA:   3'- aCCUCAgCGACgGGCaUGAGCGGgcg -5'
18819 5' -60 NC_004683.1 + 6687 0.69 0.31536
Target:  5'- cUGGuGUgGCUGgCaCGUG-UCGCCCGUg -3'
miRNA:   3'- -ACCuCAgCGACgG-GCAUgAGCGGGCG- -5'
18819 5' -60 NC_004683.1 + 4879 0.7 0.300663
Target:  5'- cUGGAG-CGC-GCcgCCGaACUgGCCCGCg -3'
miRNA:   3'- -ACCUCaGCGaCG--GGCaUGAgCGGGCG- -5'
18819 5' -60 NC_004683.1 + 32699 0.7 0.293515
Target:  5'- cUGGcAGUgGCaGCUCGcgccgGCUgGCCCGCg -3'
miRNA:   3'- -ACC-UCAgCGaCGGGCa----UGAgCGGGCG- -5'
18819 5' -60 NC_004683.1 + 36946 0.71 0.259763
Target:  5'- cGGAGgucagcuugCGCUGaaaCCGUGgUCGuCCUGCg -3'
miRNA:   3'- aCCUCa--------GCGACg--GGCAUgAGC-GGGCG- -5'
18819 5' -60 NC_004683.1 + 9276 0.71 0.229244
Target:  5'- cGGGG-CGCaUGCCCGggcuggACgugCGCcCCGCg -3'
miRNA:   3'- aCCUCaGCG-ACGGGCa-----UGa--GCG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.