miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18822 3' -60.4 NC_004683.1 + 6484 0.66 0.511883
Target:  5'- aGGA-CGCCAGCGccgaGCCGGGuCACcugcgcuCGGu -3'
miRNA:   3'- -CCUgGCGGUCGUc---UGGCCC-GUGu------GCC- -5'
18822 3' -60.4 NC_004683.1 + 47184 0.66 0.511883
Target:  5'- aGGugCGCCAG---GCCGGcaACGCGGu -3'
miRNA:   3'- -CCugGCGGUCgucUGGCCcgUGUGCC- -5'
18822 3' -60.4 NC_004683.1 + 10672 0.66 0.511883
Target:  5'- aGuCCGCagGGCAGaauGCUGGGCAgaacuuCGCGGg -3'
miRNA:   3'- cCuGGCGg-UCGUC---UGGCCCGU------GUGCC- -5'
18822 3' -60.4 NC_004683.1 + 17470 0.66 0.511883
Target:  5'- --uCCaCCGGUgaucGGAUCGGGCAC-CGGg -3'
miRNA:   3'- ccuGGcGGUCG----UCUGGCCCGUGuGCC- -5'
18822 3' -60.4 NC_004683.1 + 53664 0.66 0.511883
Target:  5'- -cGCgGCCGGCGGugCGGccggcgucuGC-CGCGGc -3'
miRNA:   3'- ccUGgCGGUCGUCugGCC---------CGuGUGCC- -5'
18822 3' -60.4 NC_004683.1 + 24726 0.66 0.511883
Target:  5'- aGGCgCGCgaacuCGGCGGcCUGGGCGC-CGGu -3'
miRNA:   3'- cCUG-GCG-----GUCGUCuGGCCCGUGuGCC- -5'
18822 3' -60.4 NC_004683.1 + 25163 0.66 0.508892
Target:  5'- aGACCGCCAcugaGGaACgGGGCcaccagguucagcaGCGCGGg -3'
miRNA:   3'- cCUGGCGGUcg--UC-UGgCCCG--------------UGUGCC- -5'
18822 3' -60.4 NC_004683.1 + 53257 0.66 0.501942
Target:  5'- gGGAUUGCCAGacguaGGugaucuGCCGGGUgaGCGGu -3'
miRNA:   3'- -CCUGGCGGUCg----UC------UGGCCCGugUGCC- -5'
18822 3' -60.4 NC_004683.1 + 13436 0.66 0.501942
Target:  5'- -cGCCGCCAccGgAGACUGGGgGCA-GGc -3'
miRNA:   3'- ccUGGCGGU--CgUCUGGCCCgUGUgCC- -5'
18822 3' -60.4 NC_004683.1 + 21744 0.66 0.501942
Target:  5'- aGcCCGCgGGCAGACCGGuGguUcaacgaccGCGGc -3'
miRNA:   3'- cCuGGCGgUCGUCUGGCC-CguG--------UGCC- -5'
18822 3' -60.4 NC_004683.1 + 10686 0.66 0.501942
Target:  5'- cGGACCGCCcGCAccucAgCGcGGCGCGCc- -3'
miRNA:   3'- -CCUGGCGGuCGUc---UgGC-CCGUGUGcc -5'
18822 3' -60.4 NC_004683.1 + 25650 0.66 0.500953
Target:  5'- cGGCCGCCGugccguuGCcGACCGcGGC-CAgGGc -3'
miRNA:   3'- cCUGGCGGU-------CGuCUGGC-CCGuGUgCC- -5'
18822 3' -60.4 NC_004683.1 + 7471 0.66 0.492087
Target:  5'- cGGCCGCCgaauccaggucgAGCGccuCCGGGUGCuCGGu -3'
miRNA:   3'- cCUGGCGG------------UCGUcu-GGCCCGUGuGCC- -5'
18822 3' -60.4 NC_004683.1 + 25234 0.66 0.492087
Target:  5'- uGACCgaGCCgAGCAGGCCGcuacccGCAC-CGGu -3'
miRNA:   3'- cCUGG--CGG-UCGUCUGGCc-----CGUGuGCC- -5'
18822 3' -60.4 NC_004683.1 + 12852 0.66 0.492087
Target:  5'- aGGCCGCUAcucGCAGACCGGaauCGC-CGa -3'
miRNA:   3'- cCUGGCGGU---CGUCUGGCCc--GUGuGCc -5'
18822 3' -60.4 NC_004683.1 + 27652 0.66 0.491106
Target:  5'- cGGACaCGUCGGCGGGCaaggcggUGGaGUACACa- -3'
miRNA:   3'- -CCUG-GCGGUCGUCUG-------GCC-CGUGUGcc -5'
18822 3' -60.4 NC_004683.1 + 20159 0.66 0.482321
Target:  5'- cGG-UgGCguGCAcGAUCGGGCcCGCGGc -3'
miRNA:   3'- -CCuGgCGguCGU-CUGGCCCGuGUGCC- -5'
18822 3' -60.4 NC_004683.1 + 21551 0.66 0.482321
Target:  5'- -cGCCGCCAGCGGGgCGugugaGGCGaaaccuGCGGu -3'
miRNA:   3'- ccUGGCGGUCGUCUgGC-----CCGUg-----UGCC- -5'
18822 3' -60.4 NC_004683.1 + 4757 0.66 0.48135
Target:  5'- cGACgCGCCcaugacgGGcCAGAUCGGGC-CACGc -3'
miRNA:   3'- cCUG-GCGG-------UC-GUCUGGCCCGuGUGCc -5'
18822 3' -60.4 NC_004683.1 + 9239 0.66 0.476507
Target:  5'- gGGACgCGCUGGCcggcgacggcucguaAGACCcucgcgGGGCGCAUGc -3'
miRNA:   3'- -CCUG-GCGGUCG---------------UCUGG------CCCGUGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.