miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18822 5' -56.4 NC_004683.1 + 46544 0.66 0.671669
Target:  5'- gACGAUgGCGCgGaUCCGG-GCCGGc-- -3'
miRNA:   3'- gUGCUA-CGCGgU-AGGUCaCGGCCauc -5'
18822 5' -56.4 NC_004683.1 + 56595 0.66 0.660775
Target:  5'- uGCGGUGCGCCuaccugccAUgCGGUgcgGCCGGg-- -3'
miRNA:   3'- gUGCUACGCGG--------UAgGUCA---CGGCCauc -5'
18822 5' -56.4 NC_004683.1 + 27839 0.66 0.638917
Target:  5'- -gUGAUGCGCgAgCUAGUGCgGGaUGGg -3'
miRNA:   3'- guGCUACGCGgUaGGUCACGgCC-AUC- -5'
18822 5' -56.4 NC_004683.1 + 25120 0.66 0.638917
Target:  5'- gGCGuUGCcgguccuggccGCCGUcaCCGGUGCgGGUAGc -3'
miRNA:   3'- gUGCuACG-----------CGGUA--GGUCACGgCCAUC- -5'
18822 5' -56.4 NC_004683.1 + 20471 0.67 0.573496
Target:  5'- --gGGUGCGCCG-CCAGcUGCCaGUGc -3'
miRNA:   3'- gugCUACGCGGUaGGUC-ACGGcCAUc -5'
18822 5' -56.4 NC_004683.1 + 9367 0.67 0.56271
Target:  5'- uCGCGggGCGCaCGUCCAGc-CCGGg-- -3'
miRNA:   3'- -GUGCuaCGCG-GUAGGUCacGGCCauc -5'
18822 5' -56.4 NC_004683.1 + 51049 0.68 0.551979
Target:  5'- cCGCGAUGCGCCAg-CAGUucccGCauGUGGa -3'
miRNA:   3'- -GUGCUACGCGGUagGUCA----CGgcCAUC- -5'
18822 5' -56.4 NC_004683.1 + 41051 0.68 0.541311
Target:  5'- gGCGAUGCGCgCggCCAG-GUCGGc-- -3'
miRNA:   3'- gUGCUACGCG-GuaGGUCaCGGCCauc -5'
18822 5' -56.4 NC_004683.1 + 34068 0.68 0.52019
Target:  5'- cCAUGAUGUG--GUCCGGcaGCCGGUAGc -3'
miRNA:   3'- -GUGCUACGCggUAGGUCa-CGGCCAUC- -5'
18822 5' -56.4 NC_004683.1 + 24559 0.69 0.449163
Target:  5'- cCAUGggGCGCCGgaUCCGG-GCgCGGUGu -3'
miRNA:   3'- -GUGCuaCGCGGU--AGGUCaCG-GCCAUc -5'
18822 5' -56.4 NC_004683.1 + 21459 0.7 0.42986
Target:  5'- cCGCGAcaucaGCGCCGcaugcCCAGUcGCCGGUGa -3'
miRNA:   3'- -GUGCUa----CGCGGUa----GGUCA-CGGCCAUc -5'
18822 5' -56.4 NC_004683.1 + 21152 0.71 0.383822
Target:  5'- cCGCGGaaaccaUGCCGUCCGGUGCUGGcGGg -3'
miRNA:   3'- -GUGCUac----GCGGUAGGUCACGGCCaUC- -5'
18822 5' -56.4 NC_004683.1 + 5803 0.72 0.332265
Target:  5'- gACGAUGCccgugggcugguuGCCcuggCCGGUGCCGGUc- -3'
miRNA:   3'- gUGCUACG-------------CGGua--GGUCACGGCCAuc -5'
18822 5' -56.4 NC_004683.1 + 6965 0.72 0.3096
Target:  5'- gACGAUcgcgccgucgcGCGCCGUCCAGcgGCC-GUAGg -3'
miRNA:   3'- gUGCUA-----------CGCGGUAGGUCa-CGGcCAUC- -5'
18822 5' -56.4 NC_004683.1 + 40830 0.77 0.157136
Target:  5'- gCACGAgGCGCCAUCgaAGUGCCGaGUGu -3'
miRNA:   3'- -GUGCUaCGCGGUAGg-UCACGGC-CAUc -5'
18822 5' -56.4 NC_004683.1 + 42186 1.07 0.001055
Target:  5'- uCACGAUGCGCCAUCCAGUGCCGGUAGc -3'
miRNA:   3'- -GUGCUACGCGGUAGGUCACGGCCAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.