miRNA display CGI


Results 21 - 40 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18825 3' -61.3 NC_004683.1 + 44427 0.73 0.159423
Target:  5'- gCCGuCGGcUUGaCGGUCGaCGGCAGCgCg -3'
miRNA:   3'- -GGCuGCCaGAC-GCCAGC-GCCGUCGgG- -5'
18825 3' -61.3 NC_004683.1 + 43579 1.11 0.000235
Target:  5'- gCCGACGGUCUGCGGUCGCGGCAGCCCc -3'
miRNA:   3'- -GGCUGCCAGACGCCAGCGCCGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 43476 0.7 0.256891
Target:  5'- -aGcCGGaUCgccugGCGGUUGCGGCGccGCCCc -3'
miRNA:   3'- ggCuGCC-AGa----CGCCAGCGCCGU--CGGG- -5'
18825 3' -61.3 NC_004683.1 + 42587 0.69 0.320998
Target:  5'- gCGGCGGUCgggGcCGGUCGUccggcugggguggucGGCGaccgcgacgacGCCCg -3'
miRNA:   3'- gGCUGCCAGa--C-GCCAGCG---------------CCGU-----------CGGG- -5'
18825 3' -61.3 NC_004683.1 + 42297 0.67 0.38951
Target:  5'- aCG-CGGgcgCUGUGGaUCGCGGCGuggguguucGCCg -3'
miRNA:   3'- gGCuGCCa--GACGCC-AGCGCCGU---------CGGg -5'
18825 3' -61.3 NC_004683.1 + 41398 0.69 0.303561
Target:  5'- cCCGuCGG-CUGgCGG-CGUGGCugguguGGCCCu -3'
miRNA:   3'- -GGCuGCCaGAC-GCCaGCGCCG------UCGGG- -5'
18825 3' -61.3 NC_004683.1 + 41024 0.77 0.079987
Target:  5'- gCCGACGGgcaacgGCGG-CGCGGuCAGCUCg -3'
miRNA:   3'- -GGCUGCCaga---CGCCaGCGCC-GUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 40868 0.7 0.263181
Target:  5'- gCCGuCGGcgagCgcguCGGUCGCGGCGGUCa -3'
miRNA:   3'- -GGCuGCCa---Gac--GCCAGCGCCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 40534 0.72 0.181262
Target:  5'- gCCGACacUCUGCGGUgCaugccacggGCGGguGCCCa -3'
miRNA:   3'- -GGCUGccAGACGCCA-G---------CGCCguCGGG- -5'
18825 3' -61.3 NC_004683.1 + 40306 0.69 0.289593
Target:  5'- cUCGGCGcGggcCUGCucggcGUCGUaGGCAGCCCg -3'
miRNA:   3'- -GGCUGC-Ca--GACGc----CAGCG-CCGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 40179 0.68 0.356482
Target:  5'- uCCGGCuGGUCUGUcaaGG-CGCGcugGGCCCg -3'
miRNA:   3'- -GGCUG-CCAGACG---CCaGCGCcg-UCGGG- -5'
18825 3' -61.3 NC_004683.1 + 38865 0.68 0.333033
Target:  5'- aCGAUGGUCagGaCGGUCuCGcGCGGCaCCu -3'
miRNA:   3'- gGCUGCCAGa-C-GCCAGcGC-CGUCG-GG- -5'
18825 3' -61.3 NC_004683.1 + 38836 0.66 0.433509
Target:  5'- aCGACGGUUUcgaGGUCGUGGCccguUCCg -3'
miRNA:   3'- gGCUGCCAGAcg-CCAGCGCCGuc--GGG- -5'
18825 3' -61.3 NC_004683.1 + 38483 0.66 0.433509
Target:  5'- cUCGGCGaacaUGUGGUCGCaGaCGGCCUg -3'
miRNA:   3'- -GGCUGCcag-ACGCCAGCGcC-GUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 37058 0.77 0.079987
Target:  5'- cCCGGCGGg--GCGGUUcggGCGGCGauGCCCa -3'
miRNA:   3'- -GGCUGCCagaCGCCAG---CGCCGU--CGGG- -5'
18825 3' -61.3 NC_004683.1 + 36664 0.68 0.356482
Target:  5'- -gGACGGU---UGGUCGCucGGguGCCCu -3'
miRNA:   3'- ggCUGCCAgacGCCAGCG--CCguCGGG- -5'
18825 3' -61.3 NC_004683.1 + 33515 0.7 0.276135
Target:  5'- gCGGCGGUCggccaGUGGU-GCGGUacgAGCUCa -3'
miRNA:   3'- gGCUGCCAGa----CGCCAgCGCCG---UCGGG- -5'
18825 3' -61.3 NC_004683.1 + 32593 0.69 0.303561
Target:  5'- gCGGcCGGUCUGCGccacGUC-CGGCugcacgauGCCCg -3'
miRNA:   3'- gGCU-GCCAGACGC----CAGcGCCGu-------CGGG- -5'
18825 3' -61.3 NC_004683.1 + 31327 0.67 0.390361
Target:  5'- -aGACGGUCcagucagccucaccgGCGGUUGUcGCucuGCCCa -3'
miRNA:   3'- ggCUGCCAGa--------------CGCCAGCGcCGu--CGGG- -5'
18825 3' -61.3 NC_004683.1 + 31292 0.67 0.397212
Target:  5'- aCCGGgGGUugugcagCUGCGGgcCGUGGCGGUg- -3'
miRNA:   3'- -GGCUgCCA-------GACGCCa-GCGCCGUCGgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.