Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18825 | 3' | -61.3 | NC_004683.1 | + | 30845 | 0.75 | 0.113368 |
Target: 5'- gCCGACGGUgCgccggUGCGGUCGaCaGCGGCCg -3' miRNA: 3'- -GGCUGCCA-G-----ACGCCAGC-GcCGUCGGg -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 28637 | 0.66 | 0.4519 |
Target: 5'- gCCGACGGcCgagacuugGCGG-CGCucGGCGuGCCg -3' miRNA: 3'- -GGCUGCCaGa-------CGCCaGCG--CCGU-CGGg -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 26333 | 0.7 | 0.275475 |
Target: 5'- aCCGGCGcuGUCgGCGGUgcgaggcCGCGuuGGCCCu -3' miRNA: 3'- -GGCUGC--CAGaCGCCA-------GCGCcgUCGGG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 25716 | 0.7 | 0.256891 |
Target: 5'- aCCG-CGaUCgGCGGcagcUCGCGGUAGCUCa -3' miRNA: 3'- -GGCuGCcAGaCGCC----AGCGCCGUCGGG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 25646 | 0.67 | 0.38951 |
Target: 5'- gCCGcCGaUC-GCGGUgGCGGUccuGCCCa -3' miRNA: 3'- -GGCuGCcAGaCGCCAgCGCCGu--CGGG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 25558 | 0.68 | 0.348539 |
Target: 5'- gCGACGGcCaGCGc-CGCGGUGGCCa -3' miRNA: 3'- gGCUGCCaGaCGCcaGCGCCGUCGGg -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 25546 | 0.66 | 0.459376 |
Target: 5'- cUCGGCcuGGUCgccgcccuggccGCGGUCGgcaacggcaCGGCGGCCg -3' miRNA: 3'- -GGCUG--CCAGa-----------CGCCAGC---------GCCGUCGGg -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 25114 | 0.68 | 0.364552 |
Target: 5'- cCCGGCGGcgUUGcCGGUCcUGGCcGCCg -3' miRNA: 3'- -GGCUGCCa-GAC-GCCAGcGCCGuCGGg -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 24796 | 0.82 | 0.036103 |
Target: 5'- gUCGACGcGggcgUUGCGGUCGCGGCGGCgCg -3' miRNA: 3'- -GGCUGC-Ca---GACGCCAGCGCCGUCGgG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 23693 | 0.69 | 0.313642 |
Target: 5'- gCCGACGGguUCUcgacguuccgccgcgGCGGcaccgGCGGCGGCaCCa -3' miRNA: 3'- -GGCUGCC--AGA---------------CGCCag---CGCCGUCG-GG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 23355 | 0.69 | 0.303561 |
Target: 5'- gCCGGggacCGGgCUGCGGUCGa-GCAGUUCg -3' miRNA: 3'- -GGCU----GCCaGACGCCAGCgcCGUCGGG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 23040 | 0.68 | 0.347751 |
Target: 5'- cCCGugGGUCggucuCGGugUCGgccugcuCGGCGGCCUg -3' miRNA: 3'- -GGCugCCAGac---GCC--AGC-------GCCGUCGGG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 21943 | 0.7 | 0.276134 |
Target: 5'- cCCGGCGGUg-GCGG--GCGGCcGCCg -3' miRNA: 3'- -GGCUGCCAgaCGCCagCGCCGuCGGg -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 21694 | 0.73 | 0.155351 |
Target: 5'- aCCGGggUGGUCggUGCGGguggCGCuGGCAGCgCCg -3' miRNA: 3'- -GGCU--GCCAG--ACGCCa---GCG-CCGUCG-GG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 21572 | 0.69 | 0.296513 |
Target: 5'- gCGGCGGUg-GCGGgCGCGGCAuGaucaCCa -3' miRNA: 3'- gGCUGCCAgaCGCCaGCGCCGU-Cg---GG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 20569 | 0.66 | 0.442651 |
Target: 5'- cCUGGCGGg--GCgucuGGUgGCGGCGGUgCg -3' miRNA: 3'- -GGCUGCCagaCG----CCAgCGCCGUCGgG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 20299 | 0.66 | 0.433509 |
Target: 5'- cCCGGcCGGg--GCGGcgacgGCGGCAGCgCg -3' miRNA: 3'- -GGCU-GCCagaCGCCag---CGCCGUCGgG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 20086 | 0.67 | 0.41556 |
Target: 5'- gUCGAUGGUggccucgGCGGuaUCGaCGGCGGCUa -3' miRNA: 3'- -GGCUGCCAga-----CGCC--AGC-GCCGUCGGg -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 20022 | 0.72 | 0.205708 |
Target: 5'- -gGGCGGUg-GUGGUCGCGGcCAGaCCg -3' miRNA: 3'- ggCUGCCAgaCGCCAGCGCC-GUCgGG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 18367 | 0.67 | 0.41556 |
Target: 5'- gCGACGGUCUaccugauggccGagaaGGUCgGCGGUgcGGCCa -3' miRNA: 3'- gGCUGCCAGA-----------Cg---CCAG-CGCCG--UCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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