miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18825 3' -61.3 NC_004683.1 + 32593 0.69 0.303561
Target:  5'- gCGGcCGGUCUGCGccacGUC-CGGCugcacgauGCCCg -3'
miRNA:   3'- gGCU-GCCAGACGC----CAGcGCCGu-------CGGG- -5'
18825 3' -61.3 NC_004683.1 + 40306 0.69 0.289593
Target:  5'- cUCGGCGcGggcCUGCucggcGUCGUaGGCAGCCCg -3'
miRNA:   3'- -GGCUGC-Ca--GACGc----CAGCG-CCGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 15893 0.7 0.263181
Target:  5'- uUCGGCaagGGUC-GCGGUCaCaGCGGCCCu -3'
miRNA:   3'- -GGCUG---CCAGaCGCCAGcGcCGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 14306 0.71 0.232957
Target:  5'- gCGGCaGUgCUGCgGGUCGCGGCcacGCaCCa -3'
miRNA:   3'- gGCUGcCA-GACG-CCAGCGCCGu--CG-GG- -5'
18825 3' -61.3 NC_004683.1 + 31327 0.67 0.390361
Target:  5'- -aGACGGUCcagucagccucaccgGCGGUUGUcGCucuGCCCa -3'
miRNA:   3'- ggCUGCCAGa--------------CGCCAGCGcCGu--CGGG- -5'
18825 3' -61.3 NC_004683.1 + 49423 0.68 0.340722
Target:  5'- aCCGGCcGUC-GUGGUgCG-GGCAGCCg -3'
miRNA:   3'- -GGCUGcCAGaCGCCA-GCgCCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 33515 0.7 0.276135
Target:  5'- gCGGCGGUCggccaGUGGU-GCGGUacgAGCUCa -3'
miRNA:   3'- gGCUGCCAGa----CGCCAgCGCCG---UCGGG- -5'
18825 3' -61.3 NC_004683.1 + 49089 0.72 0.200601
Target:  5'- cCCGGuCGGgcuugagggCgGCGGgaUCGCGGCgGGCCCg -3'
miRNA:   3'- -GGCU-GCCa--------GaCGCC--AGCGCCG-UCGGG- -5'
18825 3' -61.3 NC_004683.1 + 38865 0.68 0.333033
Target:  5'- aCGAUGGUCagGaCGGUCuCGcGCGGCaCCu -3'
miRNA:   3'- gGCUGCCAGa-C-GCCAGcGC-CGUCG-GG- -5'
18825 3' -61.3 NC_004683.1 + 40534 0.72 0.181262
Target:  5'- gCCGACacUCUGCGGUgCaugccacggGCGGguGCCCa -3'
miRNA:   3'- -GGCUGccAGACGCCA-G---------CGCCguCGGG- -5'
18825 3' -61.3 NC_004683.1 + 53716 0.69 0.2828
Target:  5'- gCCG-CGGcCa--GGUCGCGGCGGgCCu -3'
miRNA:   3'- -GGCuGCCaGacgCCAGCGCCGUCgGG- -5'
18825 3' -61.3 NC_004683.1 + 23355 0.69 0.303561
Target:  5'- gCCGGggacCGGgCUGCGGUCGa-GCAGUUCg -3'
miRNA:   3'- -GGCU----GCCaGACGCCAGCgcCGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 3355 0.7 0.274159
Target:  5'- gUCGGCGGgcCUGCccguaguuugaguaGGUCGCcGCGGCCa -3'
miRNA:   3'- -GGCUGCCa-GACG--------------CCAGCGcCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 12934 0.7 0.263181
Target:  5'- gCGAuucCGGUCUGCGaGUaGCGGCcuGCCg -3'
miRNA:   3'- gGCU---GCCAGACGC-CAgCGCCGu-CGGg -5'
18825 3' -61.3 NC_004683.1 + 56263 0.7 0.263181
Target:  5'- gCUGACGa--UGCGGgugggCGCGGUGGCCa -3'
miRNA:   3'- -GGCUGCcagACGCCa----GCGCCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 9577 0.7 0.250725
Target:  5'- uCCGGCGGcaucaaCUGUGGguuCGGCAGCUCc -3'
miRNA:   3'- -GGCUGCCa-----GACGCCagcGCCGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 250 0.66 0.4519
Target:  5'- aCCGGCGGcugCUGgGGUgucgaCGCcgaGGCGcuuGCCCc -3'
miRNA:   3'- -GGCUGCCa--GACgCCA-----GCG---CCGU---CGGG- -5'
18825 3' -61.3 NC_004683.1 + 56446 0.67 0.424478
Target:  5'- gUCGAUGGcCuuggUGCuGUCGUGggugaGCAGCCCg -3'
miRNA:   3'- -GGCUGCCaG----ACGcCAGCGC-----CGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 36664 0.68 0.356482
Target:  5'- -gGACGGU---UGGUCGCucGGguGCCCu -3'
miRNA:   3'- ggCUGCCAgacGCCAGCG--CCguCGGG- -5'
18825 3' -61.3 NC_004683.1 + 13359 0.68 0.343834
Target:  5'- uUCGcCGGgcuguagauauccgCUGCGGUCGaCGGCGacGCCg -3'
miRNA:   3'- -GGCuGCCa-------------GACGCCAGC-GCCGU--CGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.