Results 61 - 80 of 81 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18825 | 3' | -61.3 | NC_004683.1 | + | 50668 | 0.71 | 0.238174 |
Target: 5'- uCCGAgcuccaccaggcCGGUCUGCuguggcgcuacgaGGUCGaCGGCA-CCCg -3' miRNA: 3'- -GGCU------------GCCAGACG-------------CCAGC-GCCGUcGGG- -5' |
|||||||
18825 | 3' | -61.3 | NC_004683.1 | + | 47584 | 0.68 | 0.333033 |
Target: 5'- gCGACGG-CUGC-GUgGCGGCguucgGGCCg -3' miRNA: 3'- gGCUGCCaGACGcCAgCGCCG-----UCGGg -5' |
|||||||
18825 | 3' | -61.3 | NC_004683.1 | + | 23040 | 0.68 | 0.347751 |
Target: 5'- cCCGugGGUCggucuCGGugUCGgccugcuCGGCGGCCUg -3' miRNA: 3'- -GGCugCCAGac---GCC--AGC-------GCCGUCGGG- -5' |
|||||||
18825 | 3' | -61.3 | NC_004683.1 | + | 25546 | 0.66 | 0.459376 |
Target: 5'- cUCGGCcuGGUCgccgcccuggccGCGGUCGgcaacggcaCGGCGGCCg -3' miRNA: 3'- -GGCUG--CCAGa-----------CGCCAGC---------GCCGUCGGg -5' |
|||||||
18825 | 3' | -61.3 | NC_004683.1 | + | 28637 | 0.66 | 0.4519 |
Target: 5'- gCCGACGGcCgagacuugGCGG-CGCucGGCGuGCCg -3' miRNA: 3'- -GGCUGCCaGa-------CGCCaGCG--CCGU-CGGg -5' |
|||||||
18825 | 3' | -61.3 | NC_004683.1 | + | 20569 | 0.66 | 0.442651 |
Target: 5'- cCUGGCGGg--GCgucuGGUgGCGGCGGUgCg -3' miRNA: 3'- -GGCUGCCagaCG----CCAgCGCCGUCGgG- -5' |
|||||||
18825 | 3' | -61.3 | NC_004683.1 | + | 20299 | 0.66 | 0.433509 |
Target: 5'- cCCGGcCGGg--GCGGcgacgGCGGCAGCgCg -3' miRNA: 3'- -GGCU-GCCagaCGCCag---CGCCGUCGgG- -5' |
|||||||
18825 | 3' | -61.3 | NC_004683.1 | + | 38836 | 0.66 | 0.433509 |
Target: 5'- aCGACGGUUUcgaGGUCGUGGCccguUCCg -3' miRNA: 3'- gGCUGCCAGAcg-CCAGCGCCGuc--GGG- -5' |
|||||||
18825 | 3' | -61.3 | NC_004683.1 | + | 20086 | 0.67 | 0.41556 |
Target: 5'- gUCGAUGGUggccucgGCGGuaUCGaCGGCGGCUa -3' miRNA: 3'- -GGCUGCCAga-----CGCC--AGC-GCCGUCGGg -5' |
|||||||
18825 | 3' | -61.3 | NC_004683.1 | + | 44778 | 0.67 | 0.41556 |
Target: 5'- cCCGGCGG-CgGCGGgcCGCGu--GCCCg -3' miRNA: 3'- -GGCUGCCaGaCGCCa-GCGCcguCGGG- -5' |
|||||||
18825 | 3' | -61.3 | NC_004683.1 | + | 18367 | 0.67 | 0.41556 |
Target: 5'- gCGACGGUCUaccugauggccGagaaGGUCgGCGGUgcGGCCa -3' miRNA: 3'- gGCUGCCAGA-----------Cg---CCAG-CGCCG--UCGGg -5' |
|||||||
18825 | 3' | -61.3 | NC_004683.1 | + | 431 | 0.67 | 0.41556 |
Target: 5'- -aGGCGGUg-GCuGG-CGCGGCGGUCg -3' miRNA: 3'- ggCUGCCAgaCG-CCaGCGCCGUCGGg -5' |
|||||||
18825 | 3' | -61.3 | NC_004683.1 | + | 31292 | 0.67 | 0.397212 |
Target: 5'- aCCGGgGGUugugcagCUGCGGgcCGUGGCGGUg- -3' miRNA: 3'- -GGCUgCCA-------GACGCCa-GCGCCGUCGgg -5' |
|||||||
18825 | 3' | -61.3 | NC_004683.1 | + | 42297 | 0.67 | 0.38951 |
Target: 5'- aCG-CGGgcgCUGUGGaUCGCGGCGuggguguucGCCg -3' miRNA: 3'- gGCuGCCa--GACGCC-AGCGCCGU---------CGGg -5' |
|||||||
18825 | 3' | -61.3 | NC_004683.1 | + | 52103 | 0.67 | 0.38951 |
Target: 5'- aCCGcaugucaGGUCUGCGaGggaCGCGcGCAGCUg -3' miRNA: 3'- -GGCug-----CCAGACGC-Ca--GCGC-CGUCGGg -5' |
|||||||
18825 | 3' | -61.3 | NC_004683.1 | + | 25646 | 0.67 | 0.38951 |
Target: 5'- gCCGcCGaUC-GCGGUgGCGGUccuGCCCa -3' miRNA: 3'- -GGCuGCcAGaCGCCAgCGCCGu--CGGG- -5' |
|||||||
18825 | 3' | -61.3 | NC_004683.1 | + | 13375 | 0.67 | 0.378558 |
Target: 5'- gCGGCGGcacgCUGCcauucaugggccagGGUggccCGCaGGCGGCCCc -3' miRNA: 3'- gGCUGCCa---GACG--------------CCA----GCG-CCGUCGGG- -5' |
|||||||
18825 | 3' | -61.3 | NC_004683.1 | + | 5804 | 0.68 | 0.372747 |
Target: 5'- cCUGGCGGaugUCUacGCGGUCuaCGaGCAGCUCg -3' miRNA: 3'- -GGCUGCC---AGA--CGCCAGc-GC-CGUCGGG- -5' |
|||||||
18825 | 3' | -61.3 | NC_004683.1 | + | 25114 | 0.68 | 0.364552 |
Target: 5'- cCCGGCGGcgUUGcCGGUCcUGGCcGCCg -3' miRNA: 3'- -GGCUGCCa-GAC-GCCAGcGCCGuCGGg -5' |
|||||||
18825 | 3' | -61.3 | NC_004683.1 | + | 46008 | 0.68 | 0.364552 |
Target: 5'- uUCGGCGaGgugCUGCccgaCGCGGCGGCCg -3' miRNA: 3'- -GGCUGC-Ca--GACGcca-GCGCCGUCGGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home