miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18825 3' -61.3 NC_004683.1 + 31327 0.67 0.390361
Target:  5'- -aGACGGUCcagucagccucaccgGCGGUUGUcGCucuGCCCa -3'
miRNA:   3'- ggCUGCCAGa--------------CGCCAGCGcCGu--CGGG- -5'
18825 3' -61.3 NC_004683.1 + 42297 0.67 0.38951
Target:  5'- aCG-CGGgcgCUGUGGaUCGCGGCGuggguguucGCCg -3'
miRNA:   3'- gGCuGCCa--GACGCC-AGCGCCGU---------CGGg -5'
18825 3' -61.3 NC_004683.1 + 25646 0.67 0.38951
Target:  5'- gCCGcCGaUC-GCGGUgGCGGUccuGCCCa -3'
miRNA:   3'- -GGCuGCcAGaCGCCAgCGCCGu--CGGG- -5'
18825 3' -61.3 NC_004683.1 + 52103 0.67 0.38951
Target:  5'- aCCGcaugucaGGUCUGCGaGggaCGCGcGCAGCUg -3'
miRNA:   3'- -GGCug-----CCAGACGC-Ca--GCGC-CGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 13375 0.67 0.378558
Target:  5'- gCGGCGGcacgCUGCcauucaugggccagGGUggccCGCaGGCGGCCCc -3'
miRNA:   3'- gGCUGCCa---GACG--------------CCA----GCG-CCGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 5804 0.68 0.372747
Target:  5'- cCUGGCGGaugUCUacGCGGUCuaCGaGCAGCUCg -3'
miRNA:   3'- -GGCUGCC---AGA--CGCCAGc-GC-CGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 45635 0.68 0.372747
Target:  5'- aCCGugGGccagaggUUGUGGUUGUcGCGGCgCCg -3'
miRNA:   3'- -GGCugCCa------GACGCCAGCGcCGUCG-GG- -5'
18825 3' -61.3 NC_004683.1 + 46070 0.68 0.364552
Target:  5'- gCCGAacagauCGGgCUGCGaGUCGaCGcguuuGCGGCCCu -3'
miRNA:   3'- -GGCU------GCCaGACGC-CAGC-GC-----CGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 46008 0.68 0.364552
Target:  5'- uUCGGCGaGgugCUGCccgaCGCGGCGGCCg -3'
miRNA:   3'- -GGCUGC-Ca--GACGcca-GCGCCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 25114 0.68 0.364552
Target:  5'- cCCGGCGGcgUUGcCGGUCcUGGCcGCCg -3'
miRNA:   3'- -GGCUGCCa-GAC-GCCAGcGCCGuCGGg -5'
18825 3' -61.3 NC_004683.1 + 36664 0.68 0.356482
Target:  5'- -gGACGGU---UGGUCGCucGGguGCCCu -3'
miRNA:   3'- ggCUGCCAgacGCCAGCG--CCguCGGG- -5'
18825 3' -61.3 NC_004683.1 + 40179 0.68 0.356482
Target:  5'- uCCGGCuGGUCUGUcaaGG-CGCGcugGGCCCg -3'
miRNA:   3'- -GGCUG-CCAGACG---CCaGCGCcg-UCGGG- -5'
18825 3' -61.3 NC_004683.1 + 25558 0.68 0.348539
Target:  5'- gCGACGGcCaGCGc-CGCGGUGGCCa -3'
miRNA:   3'- gGCUGCCaGaCGCcaGCGCCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 23040 0.68 0.347751
Target:  5'- cCCGugGGUCggucuCGGugUCGgccugcuCGGCGGCCUg -3'
miRNA:   3'- -GGCugCCAGac---GCC--AGC-------GCCGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 13359 0.68 0.343834
Target:  5'- uUCGcCGGgcuguagauauccgCUGCGGUCGaCGGCGacGCCg -3'
miRNA:   3'- -GGCuGCCa-------------GACGCCAGC-GCCGU--CGGg -5'
18825 3' -61.3 NC_004683.1 + 49423 0.68 0.340722
Target:  5'- aCCGGCcGUC-GUGGUgCG-GGCAGCCg -3'
miRNA:   3'- -GGCUGcCAGaCGCCA-GCgCCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 38865 0.68 0.333033
Target:  5'- aCGAUGGUCagGaCGGUCuCGcGCGGCaCCu -3'
miRNA:   3'- gGCUGCCAGa-C-GCCAGcGC-CGUCG-GG- -5'
18825 3' -61.3 NC_004683.1 + 45478 0.68 0.333033
Target:  5'- uCCGcUGGUUgGCGGUCaGgGGUGGCCg -3'
miRNA:   3'- -GGCuGCCAGaCGCCAG-CgCCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 47584 0.68 0.333033
Target:  5'- gCGACGG-CUGC-GUgGCGGCguucgGGCCg -3'
miRNA:   3'- gGCUGCCaGACGcCAgCGCCG-----UCGGg -5'
18825 3' -61.3 NC_004683.1 + 46696 0.69 0.325473
Target:  5'- aUCGACGGgcgCgGCGGccUUGCcgucGCGGCCCu -3'
miRNA:   3'- -GGCUGCCa--GaCGCC--AGCGc---CGUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.