miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18825 5' -54.4 NC_004683.1 + 53825 0.66 0.810562
Target:  5'- uGCAGuccaGCUGAUCG-GGCCG-GUCGgCGu -3'
miRNA:   3'- -CGUC----CGACUAGCaCUGGUgCAGCaGC- -5'
18825 5' -54.4 NC_004683.1 + 41655 0.66 0.810562
Target:  5'- cGC-GGCUGAUCGUGAUgcUGUUuUCGc -3'
miRNA:   3'- -CGuCCGACUAGCACUGguGCAGcAGC- -5'
18825 5' -54.4 NC_004683.1 + 11925 0.66 0.791496
Target:  5'- aGCGGGCaGGUCuccgGUGAggAUGUCGUUGa -3'
miRNA:   3'- -CGUCCGaCUAG----CACUggUGCAGCAGC- -5'
18825 5' -54.4 NC_004683.1 + 50328 0.66 0.781712
Target:  5'- -uGGGCUGA----GACCGCcUCGUCGa -3'
miRNA:   3'- cgUCCGACUagcaCUGGUGcAGCAGC- -5'
18825 5' -54.4 NC_004683.1 + 42905 0.66 0.781712
Target:  5'- aCGGGCUGAagCG-GACggUACGcCGUCGg -3'
miRNA:   3'- cGUCCGACUa-GCaCUG--GUGCaGCAGC- -5'
18825 5' -54.4 NC_004683.1 + 15599 0.66 0.781712
Target:  5'- cGCAGaCUcgaaGAUCGUGGCCGCGggcaCGcCGc -3'
miRNA:   3'- -CGUCcGA----CUAGCACUGGUGCa---GCaGC- -5'
18825 5' -54.4 NC_004683.1 + 46825 0.66 0.771776
Target:  5'- --cGGUUGAUCauccgcUGGCCACGgucaccgCGUCGg -3'
miRNA:   3'- cguCCGACUAGc-----ACUGGUGCa------GCAGC- -5'
18825 5' -54.4 NC_004683.1 + 44360 0.66 0.771776
Target:  5'- cGUcGGCgcgGAUCGccgcgucgaGCCGCGUCGUCu -3'
miRNA:   3'- -CGuCCGa--CUAGCac-------UGGUGCAGCAGc -5'
18825 5' -54.4 NC_004683.1 + 55022 0.67 0.74116
Target:  5'- cGCGGGCgccggUGAgagcgaaGUGGCgAcCGUCGUCGu -3'
miRNA:   3'- -CGUCCG-----ACUag-----CACUGgU-GCAGCAGC- -5'
18825 5' -54.4 NC_004683.1 + 21786 0.67 0.720189
Target:  5'- --uGGUUGGUCGgguacGGCCACGggcggCGUUGg -3'
miRNA:   3'- cguCCGACUAGCa----CUGGUGCa----GCAGC- -5'
18825 5' -54.4 NC_004683.1 + 39951 0.68 0.688116
Target:  5'- uGCAGGUUGGcgcucgccggcUgGUGACuCGCGUCGagGu -3'
miRNA:   3'- -CGUCCGACU-----------AgCACUG-GUGCAGCagC- -5'
18825 5' -54.4 NC_004683.1 + 47282 0.68 0.688116
Target:  5'- cGCGcGGCcGGUgggGUGACCGCGUUGcCGg -3'
miRNA:   3'- -CGU-CCGaCUAg--CACUGGUGCAGCaGC- -5'
18825 5' -54.4 NC_004683.1 + 14700 0.68 0.677304
Target:  5'- cGCGGGU--GUCgGUGAUCAgccaGUCGUCGg -3'
miRNA:   3'- -CGUCCGacUAG-CACUGGUg---CAGCAGC- -5'
18825 5' -54.4 NC_004683.1 + 51702 0.68 0.666451
Target:  5'- cGCGGGCUcGGgggCGggcuUGAUCGCGUCGagcUCGg -3'
miRNA:   3'- -CGUCCGA-CUa--GC----ACUGGUGCAGC---AGC- -5'
18825 5' -54.4 NC_004683.1 + 20240 0.69 0.633741
Target:  5'- cGCGGGCccGAUCGUGcacGCCACcgUGUCa -3'
miRNA:   3'- -CGUCCGa-CUAGCAC---UGGUGcaGCAGc -5'
18825 5' -54.4 NC_004683.1 + 19754 0.69 0.61191
Target:  5'- uGCAGGUUGGcgagCGcuucGGCgGCGUCGUUGa -3'
miRNA:   3'- -CGUCCGACUa---GCa---CUGgUGCAGCAGC- -5'
18825 5' -54.4 NC_004683.1 + 49082 0.69 0.61191
Target:  5'- cGCGGGUUuucGAcuacggCGUGAUCcucgGCGUCGUCGa -3'
miRNA:   3'- -CGUCCGA---CUa-----GCACUGG----UGCAGCAGC- -5'
18825 5' -54.4 NC_004683.1 + 41466 0.72 0.47454
Target:  5'- cCGGGgaGAUCGUcGCCACGagCGUCa -3'
miRNA:   3'- cGUCCgaCUAGCAcUGGUGCa-GCAGc -5'
18825 5' -54.4 NC_004683.1 + 28798 0.72 0.464557
Target:  5'- aCAuGGCggaucGAUCGUGACCGCGUCa--- -3'
miRNA:   3'- cGU-CCGa----CUAGCACUGGUGCAGcagc -5'
18825 5' -54.4 NC_004683.1 + 4537 0.72 0.454684
Target:  5'- aGCGGGUgGAUCGcUG--CGCGUCGUCGg -3'
miRNA:   3'- -CGUCCGaCUAGC-ACugGUGCAGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.