miRNA: 3'- cgUCCGACUagcaCUGGUGcAGCAGC- -5'
miRNA: 3'- -CGUCCGaCUAG----CACUggUGCAGCAGC- -5'
miRNA: 3'- -CGUC----CGACUAGCaCUGGUgCAGCaGC- -5'
miRNA: 3'- -CGuCCGACUAGCACUGguGCAGcAGC- -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18825 | 5' | -54.4 | NC_004683.1 | + | 50328 | 0.66 | 0.781712 |
|
Target: 5'- -uGGGCUGA----GACCGCcUCGUCGa -3' miRNA: 3'- cgUCCGACUagcaCUGGUGcAGCAGC- -5' |
|||||||
| 18825 | 5' | -54.4 | NC_004683.1 | + | 11925 | 0.66 | 0.791496 |
|
Target: 5'- aGCGGGCaGGUCuccgGUGAggAUGUCGUUGa -3' miRNA: 3'- -CGUCCGaCUAG----CACUggUGCAGCAGC- -5' |
|||||||
| 18825 | 5' | -54.4 | NC_004683.1 | + | 53825 | 0.66 | 0.810562 |
|
Target: 5'- uGCAGuccaGCUGAUCG-GGCCG-GUCGgCGu -3' miRNA: 3'- -CGUC----CGACUAGCaCUGGUgCAGCaGC- -5' |
|||||||
| 18825 | 5' | -54.4 | NC_004683.1 | + | 41655 | 0.66 | 0.810562 |
|
Target: 5'- cGC-GGCUGAUCGUGAUgcUGUUuUCGc -3' miRNA: 3'- -CGuCCGACUAGCACUGguGCAGcAGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home