miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18826 5' -57.4 NC_004683.1 + 21696 0.66 0.620448
Target:  5'- cGGGGUggucgguGCG-GGUGGCGCUggcagcgcCGCCGg-- -3'
miRNA:   3'- -UCCCG-------UGCuCCAUCGUGA--------GCGGCaac -5'
18826 5' -57.4 NC_004683.1 + 3059 0.66 0.599811
Target:  5'- uGGGCcgACGAGGUcaacAGCAagcaCGCCGg-- -3'
miRNA:   3'- uCCCG--UGCUCCA----UCGUga--GCGGCaac -5'
18826 5' -57.4 NC_004683.1 + 46104 0.66 0.598728
Target:  5'- cGGGaccgcucggccgcCGCGucGGGcAGCACUCGCCGa-- -3'
miRNA:   3'- uCCC-------------GUGC--UCCaUCGUGAGCGGCaac -5'
18826 5' -57.4 NC_004683.1 + 22450 0.66 0.588985
Target:  5'- uGGGCugGAGGUG----UCGCUGUUc -3'
miRNA:   3'- uCCCGugCUCCAUcgugAGCGGCAAc -5'
18826 5' -57.4 NC_004683.1 + 14933 0.67 0.546115
Target:  5'- cGGGGUAUGAGGgugagGGCAacgagCGCCuGUUc -3'
miRNA:   3'- -UCCCGUGCUCCa----UCGUga---GCGG-CAAc -5'
18826 5' -57.4 NC_004683.1 + 17292 0.67 0.534491
Target:  5'- gGGGGCGcCGGGGUcGGCACcaugaccUCGauGUUGg -3'
miRNA:   3'- -UCCCGU-GCUCCA-UCGUG-------AGCggCAAC- -5'
18826 5' -57.4 NC_004683.1 + 4753 0.67 0.521911
Target:  5'- cGGGCcgACGAGGUccacgcccggauggAGCAgaUCGCCGa-- -3'
miRNA:   3'- uCCCG--UGCUCCA--------------UCGUg-AGCGGCaac -5'
18826 5' -57.4 NC_004683.1 + 23808 0.68 0.494048
Target:  5'- -cGGCGcCGGGGUGGUGC-CGCCGc-- -3'
miRNA:   3'- ucCCGU-GCUCCAUCGUGaGCGGCaac -5'
18826 5' -57.4 NC_004683.1 + 40930 0.68 0.494047
Target:  5'- cGGGCGcCGAGcugaccGCGC-CGCCGUUGc -3'
miRNA:   3'- uCCCGU-GCUCcau---CGUGaGCGGCAAC- -5'
18826 5' -57.4 NC_004683.1 + 39830 0.68 0.494047
Target:  5'- uGGGGUccGCGuGaGU-GCGCUCGCCGa-- -3'
miRNA:   3'- -UCCCG--UGCuC-CAuCGUGAGCGGCaac -5'
18826 5' -57.4 NC_004683.1 + 48663 0.68 0.4839
Target:  5'- cGGGCACcAGGUccGCuCUCGCCGc-- -3'
miRNA:   3'- uCCCGUGcUCCAu-CGuGAGCGGCaac -5'
18826 5' -57.4 NC_004683.1 + 51562 0.68 0.463913
Target:  5'- uGGGCGCGucGUAGUACgccugcaaGCCGUc- -3'
miRNA:   3'- uCCCGUGCucCAUCGUGag------CGGCAac -5'
18826 5' -57.4 NC_004683.1 + 39610 0.69 0.424348
Target:  5'- uGGGCGCccguuccGGGGUgGGCGC-CGCCGgggUGg -3'
miRNA:   3'- uCCCGUG-------CUCCA-UCGUGaGCGGCa--AC- -5'
18826 5' -57.4 NC_004683.1 + 49278 0.7 0.385984
Target:  5'- uAGGGCgcggguuagccagcACGAGGUGGUACcCGCCc--- -3'
miRNA:   3'- -UCCCG--------------UGCUCCAUCGUGaGCGGcaac -5'
18826 5' -57.4 NC_004683.1 + 53920 0.7 0.345857
Target:  5'- gGGGuGCACGAGGUggGGCAgauuCUCGCgGaUGa -3'
miRNA:   3'- -UCC-CGUGCUCCA--UCGU----GAGCGgCaAC- -5'
18826 5' -57.4 NC_004683.1 + 13419 0.71 0.299112
Target:  5'- gGGGGCAggcuCGAGGgGGUGgUCGCCGgugUGg -3'
miRNA:   3'- -UCCCGU----GCUCCaUCGUgAGCGGCa--AC- -5'
18826 5' -57.4 NC_004683.1 + 44528 0.71 0.299112
Target:  5'- cGGGCgccgGCGcGGUGGCGCgcugCGCgCGUUGu -3'
miRNA:   3'- uCCCG----UGCuCCAUCGUGa---GCG-GCAAC- -5'
18826 5' -57.4 NC_004683.1 + 54614 0.71 0.299112
Target:  5'- cGGGCGCa---UAGCGCUCGCCGUc- -3'
miRNA:   3'- uCCCGUGcuccAUCGUGAGCGGCAac -5'
18826 5' -57.4 NC_004683.1 + 25384 0.72 0.291814
Target:  5'- uGGGCA---GGUGGUACUCGCUGUg- -3'
miRNA:   3'- uCCCGUgcuCCAUCGUGAGCGGCAac -5'
18826 5' -57.4 NC_004683.1 + 51938 0.74 0.220586
Target:  5'- cGGGCGCGAGGUAcGCACgccCGCag-UGg -3'
miRNA:   3'- uCCCGUGCUCCAU-CGUGa--GCGgcaAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.