miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18827 5' -52.7 NC_004683.1 + 50766 0.66 0.840285
Target:  5'- -cGACcucguaGCGCCACa-GCAGAcCGGCCu -3'
miRNA:   3'- uaCUGa-----CGUGGUGgaCGUCUaGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 47545 0.66 0.840285
Target:  5'- cUGGCUGCACgACCgu--GGUC-GCCg -3'
miRNA:   3'- uACUGACGUGgUGGacguCUAGuUGG- -5'
18827 5' -52.7 NC_004683.1 + 10990 0.66 0.840285
Target:  5'- gAUGAggucCUGCACCugCagugucUGCAGAccaUCGGCa -3'
miRNA:   3'- -UACU----GACGUGGugG------ACGUCU---AGUUGg -5'
18827 5' -52.7 NC_004683.1 + 2890 0.66 0.840285
Target:  5'- -gGACUgGCgACCACCcucggUGUAGAggUAACCg -3'
miRNA:   3'- uaCUGA-CG-UGGUGG-----ACGUCUa-GUUGG- -5'
18827 5' -52.7 NC_004683.1 + 13484 0.66 0.840285
Target:  5'- -cGAacgGgGCCGCCUGCGGGcCAcCCu -3'
miRNA:   3'- uaCUga-CgUGGUGGACGUCUaGUuGG- -5'
18827 5' -52.7 NC_004683.1 + 43716 0.66 0.840285
Target:  5'- -cGACcGCAUCGC--GCGGAUCGugCa -3'
miRNA:   3'- uaCUGaCGUGGUGgaCGUCUAGUugG- -5'
18827 5' -52.7 NC_004683.1 + 20510 0.66 0.840285
Target:  5'- gGUGGCcccUGCACCGCCggUGCcgccGUUGGCCg -3'
miRNA:   3'- -UACUG---ACGUGGUGG--ACGuc--UAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 25350 0.66 0.840285
Target:  5'- -cGGCaGCGCgGCCaGCAGugCGACCa -3'
miRNA:   3'- uaCUGaCGUGgUGGaCGUCuaGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 46925 0.66 0.834818
Target:  5'- gGUGugUGC-CCgacgcggugaccgugGCCaGCGGAugaUCAACCg -3'
miRNA:   3'- -UACugACGuGG---------------UGGaCGUCU---AGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 18467 0.66 0.82927
Target:  5'- gGUGGCcGCACCGCCgaccuucUCGGCCa -3'
miRNA:   3'- -UACUGaCGUGGUGGacgucu-AGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 46613 0.66 0.821748
Target:  5'- -cGACgGCaagGCCGCC-GCGcccgucGAUCAGCCg -3'
miRNA:   3'- uaCUGaCG---UGGUGGaCGU------CUAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 41031 0.66 0.821748
Target:  5'- aGUGACcucgGCGCCuACCUcgccggcgaGCuGAUCAGCa -3'
miRNA:   3'- -UACUGa---CGUGG-UGGA---------CGuCUAGUUGg -5'
18827 5' -52.7 NC_004683.1 + 40322 0.66 0.812156
Target:  5'- -cGAC-GCG-CGCCUGCAGcUCGGCg -3'
miRNA:   3'- uaCUGaCGUgGUGGACGUCuAGUUGg -5'
18827 5' -52.7 NC_004683.1 + 103 0.66 0.812156
Target:  5'- -aGACcGCagGCCAgguUCUGCGGcgCGACCu -3'
miRNA:   3'- uaCUGaCG--UGGU---GGACGUCuaGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 13036 0.66 0.812156
Target:  5'- uUGugUGUcgacagagaccgGCCACCgGUGGggCGGCCg -3'
miRNA:   3'- uACugACG------------UGGUGGaCGUCuaGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 44912 0.66 0.802363
Target:  5'- -cGAUUGCGCgaGCUgggcgUGCAGcUCGGCCa -3'
miRNA:   3'- uaCUGACGUGg-UGG-----ACGUCuAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 8507 0.66 0.801373
Target:  5'- gGUGGCUaCACgACCgucgacaaccgacUGCAGggCGGCCa -3'
miRNA:   3'- -UACUGAcGUGgUGG-------------ACGUCuaGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 51872 0.66 0.799388
Target:  5'- --aGCUGCACCACC-GCGcGAUCcgugauggcgccggAACCc -3'
miRNA:   3'- uacUGACGUGGUGGaCGU-CUAG--------------UUGG- -5'
18827 5' -52.7 NC_004683.1 + 56975 0.66 0.792381
Target:  5'- gGUGccGCUGCAUCGgC-GCAGGUCGgggGCCu -3'
miRNA:   3'- -UAC--UGACGUGGUgGaCGUCUAGU---UGG- -5'
18827 5' -52.7 NC_004683.1 + 16518 0.66 0.792381
Target:  5'- -----aGCAgCGCCUGCGGGUUgAGCCc -3'
miRNA:   3'- uacugaCGUgGUGGACGUCUAG-UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.