miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18827 5' -52.7 NC_004683.1 + 56975 0.66 0.792381
Target:  5'- gGUGccGCUGCAUCGgC-GCAGGUCGgggGCCu -3'
miRNA:   3'- -UAC--UGACGUGGUgGaCGUCUAGU---UGG- -5'
18827 5' -52.7 NC_004683.1 + 56622 0.68 0.684811
Target:  5'- --aGCUGCACaGCgCUGCAGGUCcAUCg -3'
miRNA:   3'- uacUGACGUGgUG-GACGUCUAGuUGG- -5'
18827 5' -52.7 NC_004683.1 + 56601 0.7 0.582953
Target:  5'- -aGGCaGCACCACCgcgggccGCGGGUaCGACUa -3'
miRNA:   3'- uaCUGaCGUGGUGGa------CGUCUA-GUUGG- -5'
18827 5' -52.7 NC_004683.1 + 52655 0.7 0.605542
Target:  5'- uUGACcacGCGCCggAUCUGCucggucAGAUCGACCa -3'
miRNA:   3'- uACUGa--CGUGG--UGGACG------UCUAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 51872 0.66 0.799388
Target:  5'- --aGCUGCACCACC-GCGcGAUCcgugauggcgccggAACCc -3'
miRNA:   3'- uacUGACGUGGUGGaCGU-CUAG--------------UUGG- -5'
18827 5' -52.7 NC_004683.1 + 50766 0.66 0.840285
Target:  5'- -cGACcucguaGCGCCACa-GCAGAcCGGCCu -3'
miRNA:   3'- uaCUGa-----CGUGGUGgaCGUCUaGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 47545 0.66 0.840285
Target:  5'- cUGGCUGCACgACCgu--GGUC-GCCg -3'
miRNA:   3'- uACUGACGUGgUGGacguCUAGuUGG- -5'
18827 5' -52.7 NC_004683.1 + 46925 0.66 0.834818
Target:  5'- gGUGugUGC-CCgacgcggugaccgugGCCaGCGGAugaUCAACCg -3'
miRNA:   3'- -UACugACGuGG---------------UGGaCGUCU---AGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 46613 0.66 0.821748
Target:  5'- -cGACgGCaagGCCGCC-GCGcccgucGAUCAGCCg -3'
miRNA:   3'- uaCUGaCG---UGGUGGaCGU------CUAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 45877 0.75 0.316195
Target:  5'- cAUGugUGCGCCgAUCUgucGCAGAUUGACCc -3'
miRNA:   3'- -UACugACGUGG-UGGA---CGUCUAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 45458 0.69 0.662256
Target:  5'- gGUGGCcGUgACCACg-GCAGAUCAAUCc -3'
miRNA:   3'- -UACUGaCG-UGGUGgaCGUCUAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 44912 0.66 0.802363
Target:  5'- -cGAUUGCGCgaGCUgggcgUGCAGcUCGGCCa -3'
miRNA:   3'- uaCUGACGUGg-UGG-----ACGUCuAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 44768 1.11 0.001112
Target:  5'- cAUGACUGCACCACCUGCAGAUCAACCa -3'
miRNA:   3'- -UACUGACGUGGUGGACGUCUAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 43716 0.66 0.840285
Target:  5'- -cGACcGCAUCGC--GCGGAUCGugCa -3'
miRNA:   3'- uaCUGaCGUGGUGgaCGUCUAGUugG- -5'
18827 5' -52.7 NC_004683.1 + 41936 0.67 0.770852
Target:  5'- aGUGACgaccguUGCGCCGCUUGCucauucGGGcaccgccUCAACCu -3'
miRNA:   3'- -UACUG------ACGUGGUGGACG------UCU-------AGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 41031 0.66 0.821748
Target:  5'- aGUGACcucgGCGCCuACCUcgccggcgaGCuGAUCAGCa -3'
miRNA:   3'- -UACUGa---CGUGG-UGGA---------CGuCUAGUUGg -5'
18827 5' -52.7 NC_004683.1 + 40941 0.73 0.403997
Target:  5'- cUGACcGCGCCGCCguUGCccGUCGGCCa -3'
miRNA:   3'- uACUGaCGUGGUGG--ACGucUAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 40322 0.66 0.812156
Target:  5'- -cGAC-GCG-CGCCUGCAGcUCGGCg -3'
miRNA:   3'- uaCUGaCGUgGUGGACGUCuAGUUGg -5'
18827 5' -52.7 NC_004683.1 + 40249 0.67 0.761414
Target:  5'- -gGACUGCGCgGCC-GCGGucUCAcacACCc -3'
miRNA:   3'- uaCUGACGUGgUGGaCGUCu-AGU---UGG- -5'
18827 5' -52.7 NC_004683.1 + 32849 0.67 0.761414
Target:  5'- gGUGACggUGCagaacACgCGCCUGCAGcgCGGCa -3'
miRNA:   3'- -UACUG--ACG-----UG-GUGGACGUCuaGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.