miRNA display CGI


Results 21 - 40 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18827 5' -52.7 NC_004683.1 + 32810 0.7 0.605542
Target:  5'- -cGACgucGCACCAUC-GCAGAccgcugaucUCGGCCa -3'
miRNA:   3'- uaCUGa--CGUGGUGGaCGUCU---------AGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 26888 0.67 0.771894
Target:  5'- cUGACgacgGCGUCAUCgGCgAGGUCGGCCg -3'
miRNA:   3'- uACUGa---CGUGGUGGaCG-UCUAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 25350 0.66 0.840285
Target:  5'- -cGGCaGCGCgGCCaGCAGugCGACCa -3'
miRNA:   3'- uaCUGaCGUGgUGGaCGUCuaGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 24532 0.69 0.639581
Target:  5'- --aGCUGUGCCGaaacauCCUGaAGAUCAACCa -3'
miRNA:   3'- uacUGACGUGGU------GGACgUCUAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 22020 0.67 0.761414
Target:  5'- -cGGCcGCACCGCCaccgccggGCGGAUU-GCCg -3'
miRNA:   3'- uaCUGaCGUGGUGGa-------CGUCUAGuUGG- -5'
18827 5' -52.7 NC_004683.1 + 20510 0.66 0.840285
Target:  5'- gGUGGCcccUGCACCGCCggUGCcgccGUUGGCCg -3'
miRNA:   3'- -UACUG---ACGUGGUGG--ACGuc--UAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 20472 0.73 0.423316
Target:  5'- -cGGgUGCGCCGCCagcugccagUGCAGAUCccucGCCg -3'
miRNA:   3'- uaCUgACGUGGUGG---------ACGUCUAGu---UGG- -5'
18827 5' -52.7 NC_004683.1 + 18467 0.66 0.82927
Target:  5'- gGUGGCcGCACCGCCgaccuucUCGGCCa -3'
miRNA:   3'- -UACUGaCGUGGUGGacgucu-AGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 17979 0.68 0.707151
Target:  5'- aGUGGCagGCGCCAucCCUGCGGugaacGCCg -3'
miRNA:   3'- -UACUGa-CGUGGU--GGACGUCuagu-UGG- -5'
18827 5' -52.7 NC_004683.1 + 16694 0.73 0.413587
Target:  5'- cUGGCUGCggaucccccgGCCGCCa-CAGGUCGACCc -3'
miRNA:   3'- uACUGACG----------UGGUGGacGUCUAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 16518 0.66 0.792381
Target:  5'- -----aGCAgCGCCUGCGGGUUgAGCCc -3'
miRNA:   3'- uacugaCGUgGUGGACGUCUAG-UUGG- -5'
18827 5' -52.7 NC_004683.1 + 15455 0.69 0.673554
Target:  5'- -cGGCaucGUGCCGCC-GCAGggCAACCu -3'
miRNA:   3'- uaCUGa--CGUGGUGGaCGUCuaGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 14717 0.69 0.639581
Target:  5'- -gGGCccgGcCACCACCUcgcgggugucGguGAUCAGCCa -3'
miRNA:   3'- uaCUGa--C-GUGGUGGA----------CguCUAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 13484 0.66 0.840285
Target:  5'- -cGAacgGgGCCGCCUGCGGGcCAcCCu -3'
miRNA:   3'- uaCUga-CgUGGUGGACGUCUaGUuGG- -5'
18827 5' -52.7 NC_004683.1 + 13152 0.67 0.761414
Target:  5'- aAUGGC-GUGCCACCgGCAGcgUcGCCu -3'
miRNA:   3'- -UACUGaCGUGGUGGaCGUCuaGuUGG- -5'
18827 5' -52.7 NC_004683.1 + 13036 0.66 0.812156
Target:  5'- uUGugUGUcgacagagaccgGCCACCgGUGGggCGGCCg -3'
miRNA:   3'- uACugACG------------UGGUGGaCGUCuaGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 12557 0.68 0.729178
Target:  5'- gGUGccCUGCugCGCCU-CGGA-CAGCCg -3'
miRNA:   3'- -UACu-GACGugGUGGAcGUCUaGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 10990 0.66 0.840285
Target:  5'- gAUGAggucCUGCACCugCagugucUGCAGAccaUCGGCa -3'
miRNA:   3'- -UACU----GACGUGGugG------ACGUCU---AGUUGg -5'
18827 5' -52.7 NC_004683.1 + 8507 0.66 0.801373
Target:  5'- gGUGGCUaCACgACCgucgacaaccgacUGCAGggCGGCCa -3'
miRNA:   3'- -UACUGAcGUGgUGG-------------ACGUCuaGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 7030 0.7 0.571719
Target:  5'- --aGCUGCACCACCgcccgccGCcaGUCGGCCg -3'
miRNA:   3'- uacUGACGUGGUGGa------CGucUAGUUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.