miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18827 5' -52.7 NC_004683.1 + 45877 0.75 0.316195
Target:  5'- cAUGugUGCGCCgAUCUgucGCAGAUUGACCc -3'
miRNA:   3'- -UACugACGUGG-UGGA---CGUCUAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 43716 0.66 0.840285
Target:  5'- -cGACcGCAUCGC--GCGGAUCGugCa -3'
miRNA:   3'- uaCUGaCGUGGUGgaCGUCUAGUugG- -5'
18827 5' -52.7 NC_004683.1 + 47545 0.66 0.840285
Target:  5'- cUGGCUGCACgACCgu--GGUC-GCCg -3'
miRNA:   3'- uACUGACGUGgUGGacguCUAGuUGG- -5'
18827 5' -52.7 NC_004683.1 + 41031 0.66 0.821748
Target:  5'- aGUGACcucgGCGCCuACCUcgccggcgaGCuGAUCAGCa -3'
miRNA:   3'- -UACUGa---CGUGG-UGGA---------CGuCUAGUUGg -5'
18827 5' -52.7 NC_004683.1 + 46613 0.66 0.821748
Target:  5'- -cGACgGCaagGCCGCC-GCGcccgucGAUCAGCCg -3'
miRNA:   3'- uaCUGaCG---UGGUGGaCGU------CUAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 103 0.66 0.812156
Target:  5'- -aGACcGCagGCCAgguUCUGCGGcgCGACCu -3'
miRNA:   3'- uaCUGaCG--UGGU---GGACGUCuaGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 8507 0.66 0.801373
Target:  5'- gGUGGCUaCACgACCgucgacaaccgacUGCAGggCGGCCa -3'
miRNA:   3'- -UACUGAcGUGgUGG-------------ACGUCuaGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 51872 0.66 0.799388
Target:  5'- --aGCUGCACCACC-GCGcGAUCcgugauggcgccggAACCc -3'
miRNA:   3'- uacUGACGUGGUGGaCGU-CUAG--------------UUGG- -5'
18827 5' -52.7 NC_004683.1 + 26888 0.67 0.771894
Target:  5'- cUGACgacgGCGUCAUCgGCgAGGUCGGCCg -3'
miRNA:   3'- uACUGa---CGUGGUGGaCG-UCUAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 17979 0.68 0.707151
Target:  5'- aGUGGCagGCGCCAucCCUGCGGugaacGCCg -3'
miRNA:   3'- -UACUGa-CGUGGU--GGACGUCuagu-UGG- -5'
18827 5' -52.7 NC_004683.1 + 40941 0.73 0.403997
Target:  5'- cUGACcGCGCCGCCguUGCccGUCGGCCa -3'
miRNA:   3'- uACUGaCGUGGUGG--ACGucUAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 56601 0.7 0.582953
Target:  5'- -aGGCaGCACCACCgcgggccGCGGGUaCGACUa -3'
miRNA:   3'- uaCUGaCGUGGUGGa------CGUCUA-GUUGG- -5'
18827 5' -52.7 NC_004683.1 + 32810 0.7 0.605542
Target:  5'- -cGACgucGCACCAUC-GCAGAccgcugaucUCGGCCa -3'
miRNA:   3'- uaCUGa--CGUGGUGGaCGUCU---------AGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 24532 0.69 0.639581
Target:  5'- --aGCUGUGCCGaaacauCCUGaAGAUCAACCa -3'
miRNA:   3'- uacUGACGUGGU------GGACgUCUAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 2920 0.69 0.662256
Target:  5'- cGUGGCUGaCGCCGauCCUGCgcgAGAUUcguGCCg -3'
miRNA:   3'- -UACUGAC-GUGGU--GGACG---UCUAGu--UGG- -5'
18827 5' -52.7 NC_004683.1 + 15455 0.69 0.673554
Target:  5'- -cGGCaucGUGCCGCC-GCAGggCAACCu -3'
miRNA:   3'- uaCUGa--CGUGGUGGaCGUCuaGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 10990 0.66 0.840285
Target:  5'- gAUGAggucCUGCACCugCagugucUGCAGAccaUCGGCa -3'
miRNA:   3'- -UACU----GACGUGGugG------ACGUCU---AGUUGg -5'
18827 5' -52.7 NC_004683.1 + 16694 0.73 0.413587
Target:  5'- cUGGCUGCggaucccccgGCCGCCa-CAGGUCGACCc -3'
miRNA:   3'- uACUGACG----------UGGUGGacGUCUAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 20472 0.73 0.423316
Target:  5'- -cGGgUGCGCCGCCagcugccagUGCAGAUCccucGCCg -3'
miRNA:   3'- uaCUgACGUGGUGG---------ACGUCUAGu---UGG- -5'
18827 5' -52.7 NC_004683.1 + 7030 0.7 0.571719
Target:  5'- --aGCUGCACCACCgcccgccGCcaGUCGGCCg -3'
miRNA:   3'- uacUGACGUGGUGGa------CGucUAGUUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.