Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18827 | 5' | -52.7 | NC_004683.1 | + | 13036 | 0.66 | 0.812156 |
Target: 5'- uUGugUGUcgacagagaccgGCCACCgGUGGggCGGCCg -3' miRNA: 3'- uACugACG------------UGGUGGaCGUCuaGUUGG- -5' |
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18827 | 5' | -52.7 | NC_004683.1 | + | 40322 | 0.66 | 0.812156 |
Target: 5'- -cGAC-GCG-CGCCUGCAGcUCGGCg -3' miRNA: 3'- uaCUGaCGUgGUGGACGUCuAGUUGg -5' |
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18827 | 5' | -52.7 | NC_004683.1 | + | 18467 | 0.66 | 0.82927 |
Target: 5'- gGUGGCcGCACCGCCgaccuucUCGGCCa -3' miRNA: 3'- -UACUGaCGUGGUGGacgucu-AGUUGG- -5' |
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18827 | 5' | -52.7 | NC_004683.1 | + | 46925 | 0.66 | 0.834818 |
Target: 5'- gGUGugUGC-CCgacgcggugaccgugGCCaGCGGAugaUCAACCg -3' miRNA: 3'- -UACugACGuGG---------------UGGaCGUCU---AGUUGG- -5' |
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18827 | 5' | -52.7 | NC_004683.1 | + | 2890 | 0.66 | 0.840285 |
Target: 5'- -gGACUgGCgACCACCcucggUGUAGAggUAACCg -3' miRNA: 3'- uaCUGA-CG-UGGUGG-----ACGUCUa-GUUGG- -5' |
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18827 | 5' | -52.7 | NC_004683.1 | + | 50766 | 0.66 | 0.840285 |
Target: 5'- -cGACcucguaGCGCCACa-GCAGAcCGGCCu -3' miRNA: 3'- uaCUGa-----CGUGGUGgaCGUCUaGUUGG- -5' |
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18827 | 5' | -52.7 | NC_004683.1 | + | 25350 | 0.66 | 0.840285 |
Target: 5'- -cGGCaGCGCgGCCaGCAGugCGACCa -3' miRNA: 3'- uaCUGaCGUGgUGGaCGUCuaGUUGG- -5' |
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18827 | 5' | -52.7 | NC_004683.1 | + | 13152 | 0.67 | 0.761414 |
Target: 5'- aAUGGC-GUGCCACCgGCAGcgUcGCCu -3' miRNA: 3'- -UACUGaCGUGGUGGaCGUCuaGuUGG- -5' |
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18827 | 5' | -52.7 | NC_004683.1 | + | 32849 | 0.67 | 0.761414 |
Target: 5'- gGUGACggUGCagaacACgCGCCUGCAGcgCGGCa -3' miRNA: 3'- -UACUG--ACG-----UG-GUGGACGUCuaGUUGg -5' |
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18827 | 5' | -52.7 | NC_004683.1 | + | 22020 | 0.67 | 0.761414 |
Target: 5'- -cGGCcGCACCGCCaccgccggGCGGAUU-GCCg -3' miRNA: 3'- uaCUGaCGUGGUGGa-------CGUCUAGuUGG- -5' |
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18827 | 5' | -52.7 | NC_004683.1 | + | 16694 | 0.73 | 0.413587 |
Target: 5'- cUGGCUGCggaucccccgGCCGCCa-CAGGUCGACCc -3' miRNA: 3'- uACUGACG----------UGGUGGacGUCUAGUUGG- -5' |
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18827 | 5' | -52.7 | NC_004683.1 | + | 20472 | 0.73 | 0.423316 |
Target: 5'- -cGGgUGCGCCGCCagcugccagUGCAGAUCccucGCCg -3' miRNA: 3'- uaCUgACGUGGUGG---------ACGUCUAGu---UGG- -5' |
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18827 | 5' | -52.7 | NC_004683.1 | + | 7030 | 0.7 | 0.571719 |
Target: 5'- --aGCUGCACCACCgcccgccGCcaGUCGGCCg -3' miRNA: 3'- uacUGACGUGGUGGa------CGucUAGUUGG- -5' |
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18827 | 5' | -52.7 | NC_004683.1 | + | 52655 | 0.7 | 0.605542 |
Target: 5'- uUGACcacGCGCCggAUCUGCucggucAGAUCGACCa -3' miRNA: 3'- uACUGa--CGUGG--UGGACG------UCUAGUUGG- -5' |
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18827 | 5' | -52.7 | NC_004683.1 | + | 1379 | 0.69 | 0.628228 |
Target: 5'- gGUGAUccGUcgACCgGCCUGCGGGUUGGCCa -3' miRNA: 3'- -UACUGa-CG--UGG-UGGACGUCUAGUUGG- -5' |
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18827 | 5' | -52.7 | NC_004683.1 | + | 14717 | 0.69 | 0.639581 |
Target: 5'- -gGGCccgGcCACCACCUcgcgggugucGguGAUCAGCCa -3' miRNA: 3'- uaCUGa--C-GUGGUGGA----------CguCUAGUUGG- -5' |
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18827 | 5' | -52.7 | NC_004683.1 | + | 45458 | 0.69 | 0.662256 |
Target: 5'- gGUGGCcGUgACCACg-GCAGAUCAAUCc -3' miRNA: 3'- -UACUGaCG-UGGUGgaCGUCUAGUUGG- -5' |
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18827 | 5' | -52.7 | NC_004683.1 | + | 56622 | 0.68 | 0.684811 |
Target: 5'- --aGCUGCACaGCgCUGCAGGUCcAUCg -3' miRNA: 3'- uacUGACGUGgUG-GACGUCUAGuUGG- -5' |
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18827 | 5' | -52.7 | NC_004683.1 | + | 12557 | 0.68 | 0.729178 |
Target: 5'- gGUGccCUGCugCGCCU-CGGA-CAGCCg -3' miRNA: 3'- -UACu-GACGugGUGGAcGUCUaGUUGG- -5' |
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18827 | 5' | -52.7 | NC_004683.1 | + | 40249 | 0.67 | 0.761414 |
Target: 5'- -gGACUGCGCgGCC-GCGGucUCAcacACCc -3' miRNA: 3'- uaCUGACGUGgUGGaCGUCu-AGU---UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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