miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18827 5' -52.7 NC_004683.1 + 1379 0.69 0.628228
Target:  5'- gGUGAUccGUcgACCgGCCUGCGGGUUGGCCa -3'
miRNA:   3'- -UACUGa-CG--UGG-UGGACGUCUAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 44912 0.66 0.802363
Target:  5'- -cGAUUGCGCgaGCUgggcgUGCAGcUCGGCCa -3'
miRNA:   3'- uaCUGACGUGg-UGG-----ACGUCuAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 40322 0.66 0.812156
Target:  5'- -cGAC-GCG-CGCCUGCAGcUCGGCg -3'
miRNA:   3'- uaCUGaCGUgGUGGACGUCuAGUUGg -5'
18827 5' -52.7 NC_004683.1 + 10990 0.66 0.840285
Target:  5'- gAUGAggucCUGCACCugCagugucUGCAGAccaUCGGCa -3'
miRNA:   3'- -UACU----GACGUGGugG------ACGUCU---AGUUGg -5'
18827 5' -52.7 NC_004683.1 + 12557 0.68 0.729178
Target:  5'- gGUGccCUGCugCGCCU-CGGA-CAGCCg -3'
miRNA:   3'- -UACu-GACGugGUGGAcGUCUaGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 44768 1.11 0.001112
Target:  5'- cAUGACUGCACCACCUGCAGAUCAACCa -3'
miRNA:   3'- -UACUGACGUGGUGGACGUCUAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 16694 0.73 0.413587
Target:  5'- cUGGCUGCggaucccccgGCCGCCa-CAGGUCGACCc -3'
miRNA:   3'- uACUGACG----------UGGUGGacGUCUAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 20472 0.73 0.423316
Target:  5'- -cGGgUGCGCCGCCagcugccagUGCAGAUCccucGCCg -3'
miRNA:   3'- uaCUgACGUGGUGG---------ACGUCUAGu---UGG- -5'
18827 5' -52.7 NC_004683.1 + 7030 0.7 0.571719
Target:  5'- --aGCUGCACCACCgcccgccGCcaGUCGGCCg -3'
miRNA:   3'- uacUGACGUGGUGGa------CGucUAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 56975 0.66 0.792381
Target:  5'- gGUGccGCUGCAUCGgC-GCAGGUCGgggGCCu -3'
miRNA:   3'- -UAC--UGACGUGGUgGaCGUCUAGU---UGG- -5'
18827 5' -52.7 NC_004683.1 + 13152 0.67 0.761414
Target:  5'- aAUGGC-GUGCCACCgGCAGcgUcGCCu -3'
miRNA:   3'- -UACUGaCGUGGUGGaCGUCuaGuUGG- -5'
18827 5' -52.7 NC_004683.1 + 32849 0.67 0.761414
Target:  5'- gGUGACggUGCagaacACgCGCCUGCAGcgCGGCa -3'
miRNA:   3'- -UACUG--ACG-----UG-GUGGACGUCuaGUUGg -5'
18827 5' -52.7 NC_004683.1 + 14717 0.69 0.639581
Target:  5'- -gGGCccgGcCACCACCUcgcgggugucGguGAUCAGCCa -3'
miRNA:   3'- uaCUGa--C-GUGGUGGA----------CguCUAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 41936 0.67 0.770852
Target:  5'- aGUGACgaccguUGCGCCGCUUGCucauucGGGcaccgccUCAACCu -3'
miRNA:   3'- -UACUG------ACGUGGUGGACG------UCU-------AGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 45458 0.69 0.662256
Target:  5'- gGUGGCcGUgACCACg-GCAGAUCAAUCc -3'
miRNA:   3'- -UACUGaCG-UGGUGgaCGUCUAGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 22020 0.67 0.761414
Target:  5'- -cGGCcGCACCGCCaccgccggGCGGAUU-GCCg -3'
miRNA:   3'- uaCUGaCGUGGUGGa-------CGUCUAGuUGG- -5'
18827 5' -52.7 NC_004683.1 + 16518 0.66 0.792381
Target:  5'- -----aGCAgCGCCUGCGGGUUgAGCCc -3'
miRNA:   3'- uacugaCGUgGUGGACGUCUAG-UUGG- -5'
18827 5' -52.7 NC_004683.1 + 13036 0.66 0.812156
Target:  5'- uUGugUGUcgacagagaccgGCCACCgGUGGggCGGCCg -3'
miRNA:   3'- uACugACG------------UGGUGGaCGUCuaGUUGG- -5'
18827 5' -52.7 NC_004683.1 + 56622 0.68 0.684811
Target:  5'- --aGCUGCACaGCgCUGCAGGUCcAUCg -3'
miRNA:   3'- uacUGACGUGgUG-GACGUCUAGuUGG- -5'
18827 5' -52.7 NC_004683.1 + 40249 0.67 0.761414
Target:  5'- -gGACUGCGCgGCC-GCGGucUCAcacACCc -3'
miRNA:   3'- uaCUGACGUGgUGGaCGUCu-AGU---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.