miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1883 3' -52.9 NC_001347.2 + 229079 0.66 0.99373
Target:  5'- --cGCGCGGCGuuuuuggccaacagcACGgGCCGCgccaUGCg -3'
miRNA:   3'- acaCGCGCUGU---------------UGCaUGGCGaug-ACG- -5'
1883 3' -52.9 NC_001347.2 + 19978 0.66 0.99373
Target:  5'- -uUGCGCGACugauuuCGccGCCGUuguucuuccaccagaUACUGCa -3'
miRNA:   3'- acACGCGCUGuu----GCa-UGGCG---------------AUGACG- -5'
1883 3' -52.9 NC_001347.2 + 139311 0.66 0.993371
Target:  5'- aUGUG-GCGACGcUGUGCCGCaaGC-GCu -3'
miRNA:   3'- -ACACgCGCUGUuGCAUGGCGa-UGaCG- -5'
1883 3' -52.9 NC_001347.2 + 88474 0.66 0.993371
Target:  5'- --gGCGUGcCGGCGcccaugGCCGCcACUGUg -3'
miRNA:   3'- acaCGCGCuGUUGCa-----UGGCGaUGACG- -5'
1883 3' -52.9 NC_001347.2 + 143283 0.66 0.993371
Target:  5'- --cGCGCGGCAG---GCCGCgccgGCgUGCu -3'
miRNA:   3'- acaCGCGCUGUUgcaUGGCGa---UG-ACG- -5'
1883 3' -52.9 NC_001347.2 + 214653 0.66 0.993279
Target:  5'- --cGCGCGAgGGCGcggagcgggugauUACCGCccUGgUGCa -3'
miRNA:   3'- acaCGCGCUgUUGC-------------AUGGCG--AUgACG- -5'
1883 3' -52.9 NC_001347.2 + 124405 0.66 0.993185
Target:  5'- cGUGCGCaaguuggcgcuagagGACAGCuccaUGCUGCUcgucaagugccaggaGCUGCu -3'
miRNA:   3'- aCACGCG---------------CUGUUGc---AUGGCGA---------------UGACG- -5'
1883 3' -52.9 NC_001347.2 + 1378 0.66 0.9924
Target:  5'- cUGUGCGCaaGCAGCGUAgU-CUGCgGCg -3'
miRNA:   3'- -ACACGCGc-UGUUGCAUgGcGAUGaCG- -5'
1883 3' -52.9 NC_001347.2 + 217137 0.66 0.9924
Target:  5'- cGUGCgGCGuuACAGCGU-CUGgUGCgGCa -3'
miRNA:   3'- aCACG-CGC--UGUUGCAuGGCgAUGaCG- -5'
1883 3' -52.9 NC_001347.2 + 61554 0.66 0.9924
Target:  5'- uUGUcCGUGGCc-CGUGcCCGCaGCUGCu -3'
miRNA:   3'- -ACAcGCGCUGuuGCAU-GGCGaUGACG- -5'
1883 3' -52.9 NC_001347.2 + 151719 0.66 0.9924
Target:  5'- cGUGCGCGAacuGCGcgACCuGCUcAC-GCg -3'
miRNA:   3'- aCACGCGCUgu-UGCa-UGG-CGA-UGaCG- -5'
1883 3' -52.9 NC_001347.2 + 75656 0.66 0.9924
Target:  5'- -aUGCGCaGAuCGGaaaaGUGCUGCUGCaGCa -3'
miRNA:   3'- acACGCG-CU-GUUg---CAUGGCGAUGaCG- -5'
1883 3' -52.9 NC_001347.2 + 58694 0.66 0.9924
Target:  5'- gGUGCaGCGGCugacggugAACGUGgcUCGCUGCguguuUGCg -3'
miRNA:   3'- aCACG-CGCUG--------UUGCAU--GGCGAUG-----ACG- -5'
1883 3' -52.9 NC_001347.2 + 126028 0.66 0.9924
Target:  5'- cGUGCGaacCGACAugGgcguCCGCg--UGCa -3'
miRNA:   3'- aCACGC---GCUGUugCau--GGCGaugACG- -5'
1883 3' -52.9 NC_001347.2 + 90622 0.66 0.992297
Target:  5'- cGUGUGCugaucgaGGCGGCGUugCggcaGUUugUGCa -3'
miRNA:   3'- aCACGCG-------CUGUUGCAugG----CGAugACG- -5'
1883 3' -52.9 NC_001347.2 + 19199 0.66 0.99132
Target:  5'- cGUGUGUaGCcACGUGuuGgUACUGUg -3'
miRNA:   3'- aCACGCGcUGuUGCAUggCgAUGACG- -5'
1883 3' -52.9 NC_001347.2 + 74757 0.66 0.99132
Target:  5'- gGUGC-CGAC-GCG-ACCGCUGgUGa -3'
miRNA:   3'- aCACGcGCUGuUGCaUGGCGAUgACg -5'
1883 3' -52.9 NC_001347.2 + 135274 0.66 0.99132
Target:  5'- gGUGCGUGcgaaaGCAgcGCGUGCaCGCgUAgaGCg -3'
miRNA:   3'- aCACGCGC-----UGU--UGCAUG-GCG-AUgaCG- -5'
1883 3' -52.9 NC_001347.2 + 84629 0.66 0.990973
Target:  5'- --cGCGCGACAcgcaagagaccacgACGcgccucAUCGCUGCUGg -3'
miRNA:   3'- acaCGCGCUGU--------------UGCa-----UGGCGAUGACg -5'
1883 3' -52.9 NC_001347.2 + 55858 0.66 0.990122
Target:  5'- cGU-CGCGuCAGCGgcaCGgUGCUGCg -3'
miRNA:   3'- aCAcGCGCuGUUGCaugGCgAUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.