miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1883 3' -52.9 NC_001347.2 + 150972 0.81 0.397632
Target:  5'- gGUGCGCGGCGACaaGCUGUgGCUGCa -3'
miRNA:   3'- aCACGCGCUGUUGcaUGGCGaUGACG- -5'
1883 3' -52.9 NC_001347.2 + 132027 0.81 0.432259
Target:  5'- --cGCGCGuguGCGGCGUACCGCUGauacuCUGCa -3'
miRNA:   3'- acaCGCGC---UGUUGCAUGGCGAU-----GACG- -5'
1883 3' -52.9 NC_001347.2 + 228242 0.8 0.468583
Target:  5'- cGUGCGCGAUAGCGggaGCCGUgggguccGCUGUa -3'
miRNA:   3'- aCACGCGCUGUUGCa--UGGCGa------UGACG- -5'
1883 3' -52.9 NC_001347.2 + 150669 0.79 0.496825
Target:  5'- cGUGCGCGAaAGCuucgGCCgGCUGCUGCa -3'
miRNA:   3'- aCACGCGCUgUUGca--UGG-CGAUGACG- -5'
1883 3' -52.9 NC_001347.2 + 164303 0.79 0.496825
Target:  5'- cUGgGCGCGACGcgGCGUGCUGCUGCUc- -3'
miRNA:   3'- -ACaCGCGCUGU--UGCAUGGCGAUGAcg -5'
1883 3' -52.9 NC_001347.2 + 203928 0.79 0.525808
Target:  5'- aGUGCaGCGACGAUcccucGCCGCUAUUGCu -3'
miRNA:   3'- aCACG-CGCUGUUGca---UGGCGAUGACG- -5'
1883 3' -52.9 NC_001347.2 + 152851 0.78 0.575406
Target:  5'- gUGcUGCGCGACccguGCGUGCUGCgcaagcaGCUGCu -3'
miRNA:   3'- -AC-ACGCGCUGu---UGCAUGGCGa------UGACG- -5'
1883 3' -52.9 NC_001347.2 + 229027 0.78 0.58547
Target:  5'- --aGCGCGAC-GCGgGCaCGCUGCUGCc -3'
miRNA:   3'- acaCGCGCUGuUGCaUG-GCGAUGACG- -5'
1883 3' -52.9 NC_001347.2 + 69360 0.77 0.604676
Target:  5'- cGUGUgGUGACGACGUucuugaguccuccGCCGCUACaGCg -3'
miRNA:   3'- aCACG-CGCUGUUGCA-------------UGGCGAUGaCG- -5'
1883 3' -52.9 NC_001347.2 + 162655 0.76 0.67667
Target:  5'- cGUGUccaGCGGCAGCGacaugcgGCCGCUGCcGCc -3'
miRNA:   3'- aCACG---CGCUGUUGCa------UGGCGAUGaCG- -5'
1883 3' -52.9 NC_001347.2 + 1732 0.75 0.706715
Target:  5'- gUGUGCGCGAaAGCcuGUGCCGCgGCaGCg -3'
miRNA:   3'- -ACACGCGCUgUUG--CAUGGCGaUGaCG- -5'
1883 3' -52.9 NC_001347.2 + 190765 0.75 0.706715
Target:  5'- --gGCGCGGCGACaUGCCGUUGCgcuggGCc -3'
miRNA:   3'- acaCGCGCUGUUGcAUGGCGAUGa----CG- -5'
1883 3' -52.9 NC_001347.2 + 102011 0.75 0.716618
Target:  5'- gGUG-GCGACGGCGccACUGCcGCUGCg -3'
miRNA:   3'- aCACgCGCUGUUGCa-UGGCGaUGACG- -5'
1883 3' -52.9 NC_001347.2 + 192331 0.74 0.755425
Target:  5'- --aGCGCGuccCAGCGcgGCCGCUcccACUGCu -3'
miRNA:   3'- acaCGCGCu--GUUGCa-UGGCGA---UGACG- -5'
1883 3' -52.9 NC_001347.2 + 32673 0.74 0.774222
Target:  5'- aGUGCGCGccgcCGACucgcUGCCGCaGCUGCu -3'
miRNA:   3'- aCACGCGCu---GUUGc---AUGGCGaUGACG- -5'
1883 3' -52.9 NC_001347.2 + 190518 0.74 0.783437
Target:  5'- --cGCGCGGCAggcGCGUACCaCUGgaGCg -3'
miRNA:   3'- acaCGCGCUGU---UGCAUGGcGAUgaCG- -5'
1883 3' -52.9 NC_001347.2 + 29289 0.73 0.801457
Target:  5'- cGUGCGCGACG----ACCGCUACa-- -3'
miRNA:   3'- aCACGCGCUGUugcaUGGCGAUGacg -5'
1883 3' -52.9 NC_001347.2 + 58993 0.73 0.801457
Target:  5'- cGUGCGCGugAGC--AgCGCUACUcGCu -3'
miRNA:   3'- aCACGCGCugUUGcaUgGCGAUGA-CG- -5'
1883 3' -52.9 NC_001347.2 + 152577 0.73 0.818874
Target:  5'- gGUGCGUaacgguggGACug-GUACCGCUGCUGg -3'
miRNA:   3'- aCACGCG--------CUGuugCAUGGCGAUGACg -5'
1883 3' -52.9 NC_001347.2 + 142671 0.73 0.835621
Target:  5'- cGUGCccaccaGCGACGGCG-GCUGCUGUUGCu -3'
miRNA:   3'- aCACG------CGCUGUUGCaUGGCGAUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.