miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1883 3' -52.9 NC_001347.2 + 168285 0.66 0.989738
Target:  5'- -aUGCGgGuCcGCGUGCUGCUucaggaacacgaacACUGCu -3'
miRNA:   3'- acACGCgCuGuUGCAUGGCGA--------------UGACG- -5'
1883 3' -52.9 NC_001347.2 + 55735 0.66 0.988798
Target:  5'- cUGUGCuGCGACAA-GUucCUGCUGCcgGUg -3'
miRNA:   3'- -ACACG-CGCUGUUgCAu-GGCGAUGa-CG- -5'
1883 3' -52.9 NC_001347.2 + 143400 0.66 0.988798
Target:  5'- cGUGUGCGACAccaGCGcGgCGCcaUGCUcGCc -3'
miRNA:   3'- aCACGCGCUGU---UGCaUgGCG--AUGA-CG- -5'
1883 3' -52.9 NC_001347.2 + 133986 0.66 0.988798
Target:  5'- aGUGCGCGGCGcACaugaucaucucgGUGCUGagcCUGCa -3'
miRNA:   3'- aCACGCGCUGU-UG------------CAUGGCgauGACG- -5'
1883 3' -52.9 NC_001347.2 + 140760 0.66 0.988798
Target:  5'- gGUGCGCGACGAg--GCCgGCcagGCggGCa -3'
miRNA:   3'- aCACGCGCUGUUgcaUGG-CGa--UGa-CG- -5'
1883 3' -52.9 NC_001347.2 + 142750 0.66 0.988798
Target:  5'- cUGUGUGgaaaCGuCGAUGUACCGUgacgUugUGCa -3'
miRNA:   3'- -ACACGC----GCuGUUGCAUGGCG----AugACG- -5'
1883 3' -52.9 NC_001347.2 + 117092 0.66 0.988798
Target:  5'- --gGCGUGGCGGCcugACUGCgGCUGUc -3'
miRNA:   3'- acaCGCGCUGUUGca-UGGCGaUGACG- -5'
1883 3' -52.9 NC_001347.2 + 116767 0.66 0.988231
Target:  5'- --cGCGCccguacacGGcCAACGUACCGCgacgccgacccacGCUGCa -3'
miRNA:   3'- acaCGCG--------CU-GUUGCAUGGCGa------------UGACG- -5'
1883 3' -52.9 NC_001347.2 + 228065 0.67 0.98794
Target:  5'- cGgcgGCGuCGGgGAcCGUGCCGCgcgccaugcugguggUGCUGCu -3'
miRNA:   3'- aCa--CGC-GCUgUU-GCAUGGCG---------------AUGACG- -5'
1883 3' -52.9 NC_001347.2 + 145665 0.67 0.98734
Target:  5'- cGUGgGUGGCcucGCGguggcUGCCGCUACUa- -3'
miRNA:   3'- aCACgCGCUGu--UGC-----AUGGCGAUGAcg -5'
1883 3' -52.9 NC_001347.2 + 123202 0.67 0.98734
Target:  5'- gGUGCGCGuACGAC--ACgCGCUguGCUGg -3'
miRNA:   3'- aCACGCGC-UGUUGcaUG-GCGA--UGACg -5'
1883 3' -52.9 NC_001347.2 + 227878 0.67 0.98734
Target:  5'- --cGCGCGGCGGC-UGCUGCccgaGCUGg -3'
miRNA:   3'- acaCGCGCUGUUGcAUGGCGa---UGACg -5'
1883 3' -52.9 NC_001347.2 + 32442 0.67 0.98734
Target:  5'- --aGC-CGGCAACGUGCCaucagcGCUGUUGCc -3'
miRNA:   3'- acaCGcGCUGUUGCAUGG------CGAUGACG- -5'
1883 3' -52.9 NC_001347.2 + 60152 0.67 0.98734
Target:  5'- --cGCGUGACAGCGgucCCGCcg-UGCc -3'
miRNA:   3'- acaCGCGCUGUUGCau-GGCGaugACG- -5'
1883 3' -52.9 NC_001347.2 + 126741 0.67 0.98734
Target:  5'- cGU-CGCcacCGACGcacauacGCCGCUGCUGCa -3'
miRNA:   3'- aCAcGCGcu-GUUGCa------UGGCGAUGACG- -5'
1883 3' -52.9 NC_001347.2 + 22279 0.67 0.98574
Target:  5'- ---cCGCGuCug-GUACCGCUACUGUg -3'
miRNA:   3'- acacGCGCuGuugCAUGGCGAUGACG- -5'
1883 3' -52.9 NC_001347.2 + 23419 0.67 0.98574
Target:  5'- cGUG-GCaACGGCGUGCCGC-GCUcGUg -3'
miRNA:   3'- aCACgCGcUGUUGCAUGGCGaUGA-CG- -5'
1883 3' -52.9 NC_001347.2 + 34161 0.67 0.98574
Target:  5'- --aGCGCGAacucauCG-GCCGCUGcCUGCc -3'
miRNA:   3'- acaCGCGCUguu---GCaUGGCGAU-GACG- -5'
1883 3' -52.9 NC_001347.2 + 118662 0.67 0.985572
Target:  5'- --cGCaGCGACAuggacggcgacguGCGUACCGCg---GCa -3'
miRNA:   3'- acaCG-CGCUGU-------------UGCAUGGCGaugaCG- -5'
1883 3' -52.9 NC_001347.2 + 74944 0.67 0.984172
Target:  5'- gGUGUGgGGCccgugagggggaguCGUuggGCCGUUACUGCu -3'
miRNA:   3'- aCACGCgCUGuu------------GCA---UGGCGAUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.