miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1883 3' -52.9 NC_001347.2 + 854 0.69 0.956579
Target:  5'- aGUGCGCaGGCAGCGUcggacacaACaCGCuUACgGCc -3'
miRNA:   3'- aCACGCG-CUGUUGCA--------UG-GCG-AUGaCG- -5'
1883 3' -52.9 NC_001347.2 + 1378 0.66 0.9924
Target:  5'- cUGUGCGCaaGCAGCGUAgU-CUGCgGCg -3'
miRNA:   3'- -ACACGCGc-UGUUGCAUgGcGAUGaCG- -5'
1883 3' -52.9 NC_001347.2 + 1732 0.75 0.706715
Target:  5'- gUGUGCGCGAaAGCcuGUGCCGCgGCaGCg -3'
miRNA:   3'- -ACACGCGCUgUUG--CAUGGCGaUGaCG- -5'
1883 3' -52.9 NC_001347.2 + 18266 0.68 0.972711
Target:  5'- cUGUGUGCGGCAucuuuggcucuAUGUGCCuCUACg-- -3'
miRNA:   3'- -ACACGCGCUGU-----------UGCAUGGcGAUGacg -5'
1883 3' -52.9 NC_001347.2 + 19199 0.66 0.99132
Target:  5'- cGUGUGUaGCcACGUGuuGgUACUGUg -3'
miRNA:   3'- aCACGCGcUGuUGCAUggCgAUGACG- -5'
1883 3' -52.9 NC_001347.2 + 19978 0.66 0.99373
Target:  5'- -uUGCGCGACugauuuCGccGCCGUuguucuuccaccagaUACUGCa -3'
miRNA:   3'- acACGCGCUGuu----GCa-UGGCG---------------AUGACG- -5'
1883 3' -52.9 NC_001347.2 + 22236 0.7 0.9299
Target:  5'- aGU-CGCGGCGuuCGUuggcGCCGCUGCcGCg -3'
miRNA:   3'- aCAcGCGCUGUu-GCA----UGGCGAUGaCG- -5'
1883 3' -52.9 NC_001347.2 + 22279 0.67 0.98574
Target:  5'- ---cCGCGuCug-GUACCGCUACUGUg -3'
miRNA:   3'- acacGCGCuGuugCAUGGCGAUGACG- -5'
1883 3' -52.9 NC_001347.2 + 23419 0.67 0.98574
Target:  5'- cGUG-GCaACGGCGUGCCGC-GCUcGUg -3'
miRNA:   3'- aCACgCGcUGUUGCAUGGCGaUGA-CG- -5'
1883 3' -52.9 NC_001347.2 + 28671 0.68 0.963664
Target:  5'- --aGgGCGAucaCAACGUGCCGuCUgaACUGUa -3'
miRNA:   3'- acaCgCGCU---GUUGCAUGGC-GA--UGACG- -5'
1883 3' -52.9 NC_001347.2 + 28777 0.68 0.964978
Target:  5'- gGUGCGCGACgAaggacgggaugcacaGCGUcuggccagcuACCuCUGCUGCc -3'
miRNA:   3'- aCACGCGCUG-U---------------UGCA----------UGGcGAUGACG- -5'
1883 3' -52.9 NC_001347.2 + 29289 0.73 0.801457
Target:  5'- cGUGCGCGACG----ACCGCUACa-- -3'
miRNA:   3'- aCACGCGCUGUugcaUGGCGAUGacg -5'
1883 3' -52.9 NC_001347.2 + 30713 0.68 0.972711
Target:  5'- gGUgGUGCGACugcuGC-UACCGCcgcGCUGCu -3'
miRNA:   3'- aCA-CGCGCUGu---UGcAUGGCGa--UGACG- -5'
1883 3' -52.9 NC_001347.2 + 31157 0.68 0.969899
Target:  5'- -cUGCGCGGCuacccGGCGUACCGUgucGCcccGCa -3'
miRNA:   3'- acACGCGCUG-----UUGCAUGGCGa--UGa--CG- -5'
1883 3' -52.9 NC_001347.2 + 31313 0.7 0.924637
Target:  5'- gGUGagcCGCGGCGauucggGCGUGCCGCga-UGCc -3'
miRNA:   3'- aCAC---GCGCUGU------UGCAUGGCGaugACG- -5'
1883 3' -52.9 NC_001347.2 + 32442 0.67 0.98734
Target:  5'- --aGC-CGGCAACGUGCCaucagcGCUGUUGCc -3'
miRNA:   3'- acaCGcGCUGUUGCAUGG------CGAUGACG- -5'
1883 3' -52.9 NC_001347.2 + 32673 0.74 0.774222
Target:  5'- aGUGCGCGccgcCGACucgcUGCCGCaGCUGCu -3'
miRNA:   3'- aCACGCGCu---GUUGc---AUGGCGaUGACG- -5'
1883 3' -52.9 NC_001347.2 + 33414 0.7 0.938307
Target:  5'- gGUGCaGCGgauucccgacuaccGCAGCGUGUCGCUGC-GCa -3'
miRNA:   3'- aCACG-CGC--------------UGUUGCAUGGCGAUGaCG- -5'
1883 3' -52.9 NC_001347.2 + 33675 0.69 0.956579
Target:  5'- cGUGC-UGGCccuGCGUAUCauucgGCUGCUGCg -3'
miRNA:   3'- aCACGcGCUGu--UGCAUGG-----CGAUGACG- -5'
1883 3' -52.9 NC_001347.2 + 34161 0.67 0.98574
Target:  5'- --aGCGCGAacucauCG-GCCGCUGcCUGCc -3'
miRNA:   3'- acaCGCGCUguu---GCaUGGCGAU-GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.