Results 1 - 20 of 126 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1883 | 3' | -52.9 | NC_001347.2 | + | 228242 | 0.8 | 0.468583 |
Target: 5'- cGUGCGCGAUAGCGggaGCCGUgggguccGCUGUa -3' miRNA: 3'- aCACGCGCUGUUGCa--UGGCGa------UGACG- -5' |
|||||||
1883 | 3' | -52.9 | NC_001347.2 | + | 217137 | 0.66 | 0.9924 |
Target: 5'- cGUGCgGCGuuACAGCGU-CUGgUGCgGCa -3' miRNA: 3'- aCACG-CGC--UGUUGCAuGGCgAUGaCG- -5' |
|||||||
1883 | 3' | -52.9 | NC_001347.2 | + | 1378 | 0.66 | 0.9924 |
Target: 5'- cUGUGCGCaaGCAGCGUAgU-CUGCgGCg -3' miRNA: 3'- -ACACGCGc-UGUUGCAUgGcGAUGaCG- -5' |
|||||||
1883 | 3' | -52.9 | NC_001347.2 | + | 74757 | 0.66 | 0.99132 |
Target: 5'- gGUGC-CGAC-GCG-ACCGCUGgUGa -3' miRNA: 3'- aCACGcGCUGuUGCaUGGCGAUgACg -5' |
|||||||
1883 | 3' | -52.9 | NC_001347.2 | + | 19199 | 0.66 | 0.99132 |
Target: 5'- cGUGUGUaGCcACGUGuuGgUACUGUg -3' miRNA: 3'- aCACGCGcUGuUGCAUggCgAUGACG- -5' |
|||||||
1883 | 3' | -52.9 | NC_001347.2 | + | 90622 | 0.66 | 0.992297 |
Target: 5'- cGUGUGCugaucgaGGCGGCGUugCggcaGUUugUGCa -3' miRNA: 3'- aCACGCG-------CUGUUGCAugG----CGAugACG- -5' |
|||||||
1883 | 3' | -52.9 | NC_001347.2 | + | 55858 | 0.66 | 0.990122 |
Target: 5'- cGU-CGCGuCAGCGgcaCGgUGCUGCg -3' miRNA: 3'- aCAcGCGCuGUUGCaugGCgAUGACG- -5' |
|||||||
1883 | 3' | -52.9 | NC_001347.2 | + | 84629 | 0.66 | 0.990973 |
Target: 5'- --cGCGCGACAcgcaagagaccacgACGcgccucAUCGCUGCUGg -3' miRNA: 3'- acaCGCGCUGU--------------UGCa-----UGGCGAUGACg -5' |
|||||||
1883 | 3' | -52.9 | NC_001347.2 | + | 135274 | 0.66 | 0.99132 |
Target: 5'- gGUGCGUGcgaaaGCAgcGCGUGCaCGCgUAgaGCg -3' miRNA: 3'- aCACGCGC-----UGU--UGCAUG-GCG-AUgaCG- -5' |
|||||||
1883 | 3' | -52.9 | NC_001347.2 | + | 61554 | 0.66 | 0.9924 |
Target: 5'- uUGUcCGUGGCc-CGUGcCCGCaGCUGCu -3' miRNA: 3'- -ACAcGCGCUGuuGCAU-GGCGaUGACG- -5' |
|||||||
1883 | 3' | -52.9 | NC_001347.2 | + | 151719 | 0.66 | 0.9924 |
Target: 5'- cGUGCGCGAacuGCGcgACCuGCUcAC-GCg -3' miRNA: 3'- aCACGCGCUgu-UGCa-UGG-CGA-UGaCG- -5' |
|||||||
1883 | 3' | -52.9 | NC_001347.2 | + | 75656 | 0.66 | 0.9924 |
Target: 5'- -aUGCGCaGAuCGGaaaaGUGCUGCUGCaGCa -3' miRNA: 3'- acACGCG-CU-GUUg---CAUGGCGAUGaCG- -5' |
|||||||
1883 | 3' | -52.9 | NC_001347.2 | + | 229079 | 0.66 | 0.99373 |
Target: 5'- --cGCGCGGCGuuuuuggccaacagcACGgGCCGCgccaUGCg -3' miRNA: 3'- acaCGCGCUGU---------------UGCaUGGCGaug-ACG- -5' |
|||||||
1883 | 3' | -52.9 | NC_001347.2 | + | 19978 | 0.66 | 0.99373 |
Target: 5'- -uUGCGCGACugauuuCGccGCCGUuguucuuccaccagaUACUGCa -3' miRNA: 3'- acACGCGCUGuu----GCa-UGGCG---------------AUGACG- -5' |
|||||||
1883 | 3' | -52.9 | NC_001347.2 | + | 88474 | 0.66 | 0.993371 |
Target: 5'- --gGCGUGcCGGCGcccaugGCCGCcACUGUg -3' miRNA: 3'- acaCGCGCuGUUGCa-----UGGCGaUGACG- -5' |
|||||||
1883 | 3' | -52.9 | NC_001347.2 | + | 143283 | 0.66 | 0.993371 |
Target: 5'- --cGCGCGGCAG---GCCGCgccgGCgUGCu -3' miRNA: 3'- acaCGCGCUGUUgcaUGGCGa---UG-ACG- -5' |
|||||||
1883 | 3' | -52.9 | NC_001347.2 | + | 214653 | 0.66 | 0.993279 |
Target: 5'- --cGCGCGAgGGCGcggagcgggugauUACCGCccUGgUGCa -3' miRNA: 3'- acaCGCGCUgUUGC-------------AUGGCG--AUgACG- -5' |
|||||||
1883 | 3' | -52.9 | NC_001347.2 | + | 124405 | 0.66 | 0.993185 |
Target: 5'- cGUGCGCaaguuggcgcuagagGACAGCuccaUGCUGCUcgucaagugccaggaGCUGCu -3' miRNA: 3'- aCACGCG---------------CUGUUGc---AUGGCGA---------------UGACG- -5' |
|||||||
1883 | 3' | -52.9 | NC_001347.2 | + | 126028 | 0.66 | 0.9924 |
Target: 5'- cGUGCGaacCGACAugGgcguCCGCg--UGCa -3' miRNA: 3'- aCACGC---GCUGUugCau--GGCGaugACG- -5' |
|||||||
1883 | 3' | -52.9 | NC_001347.2 | + | 58694 | 0.66 | 0.9924 |
Target: 5'- gGUGCaGCGGCugacggugAACGUGgcUCGCUGCguguuUGCg -3' miRNA: 3'- aCACG-CGCUG--------UUGCAU--GGCGAUG-----ACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home