miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1883 5' -56.9 NC_001347.2 + 164433 0.66 0.931654
Target:  5'- -gGCAGCgccaGCGGCugGCcu-UCGGCAc -3'
miRNA:   3'- gaCGUCGa---CGCUGugCGcauGGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 136576 0.66 0.926548
Target:  5'- -cGCAGCUGCaccaacucauGAC-CGCGUAUCuuggaaGGCGg -3'
miRNA:   3'- gaCGUCGACG----------CUGuGCGCAUGG------UCGU- -5'
1883 5' -56.9 NC_001347.2 + 229665 0.66 0.926548
Target:  5'- -gGCGGCUGUGcgcuccagugguACGCGCcUGCCGcGCGu -3'
miRNA:   3'- gaCGUCGACGC------------UGUGCGcAUGGU-CGU- -5'
1883 5' -56.9 NC_001347.2 + 73229 0.66 0.926025
Target:  5'- gCUGguGCUGgcucugcUGugGCGCGgucaugGCCAGUc -3'
miRNA:   3'- -GACguCGAC-------GCugUGCGCa-----UGGUCGu -5'
1883 5' -56.9 NC_001347.2 + 90085 0.66 0.924971
Target:  5'- -cGCAGCauuuggcguuggugUGUGGCACGUGUcCgCAGCu -3'
miRNA:   3'- gaCGUCG--------------ACGCUGUGCGCAuG-GUCGu -5'
1883 5' -56.9 NC_001347.2 + 228565 0.66 0.921212
Target:  5'- -gGgAGCUGCGcCG-GCGguggGCCGGCAc -3'
miRNA:   3'- gaCgUCGACGCuGUgCGCa---UGGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 229268 0.66 0.921212
Target:  5'- gCUGCGGCUaCGACgACGCcggGCCAcgGCGu -3'
miRNA:   3'- -GACGUCGAcGCUG-UGCGca-UGGU--CGU- -5'
1883 5' -56.9 NC_001347.2 + 45402 0.66 0.921212
Target:  5'- -cGCAGCUG-GGC-CGUGaaaACCAGCu -3'
miRNA:   3'- gaCGUCGACgCUGuGCGCa--UGGUCGu -5'
1883 5' -56.9 NC_001347.2 + 143405 0.66 0.921212
Target:  5'- -cGCAGCgugUGCGACaccaGCGCGgcGCCAuGCu -3'
miRNA:   3'- gaCGUCG---ACGCUG----UGCGCa-UGGU-CGu -5'
1883 5' -56.9 NC_001347.2 + 131153 0.66 0.919567
Target:  5'- uUGggaAGCcGCGGCGCGCGUACgccgagacccgacgCGGCGa -3'
miRNA:   3'- gACg--UCGaCGCUGUGCGCAUG--------------GUCGU- -5'
1883 5' -56.9 NC_001347.2 + 163378 0.66 0.917901
Target:  5'- -aGCAGCUgguguuucgauugcgGCGGCaacggGCGCGacACCGGCGa -3'
miRNA:   3'- gaCGUCGA---------------CGCUG-----UGCGCa-UGGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 73490 0.66 0.915648
Target:  5'- -gGCGGCaGCGGCA-GCGgcggGCCAGg- -3'
miRNA:   3'- gaCGUCGaCGCUGUgCGCa---UGGUCgu -5'
1883 5' -56.9 NC_001347.2 + 113908 0.66 0.9122
Target:  5'- aUGCAGCgaGCGACACGUGgUggaaauuacaacaccGCCAcGCu -3'
miRNA:   3'- gACGUCGa-CGCUGUGCGC-A---------------UGGU-CGu -5'
1883 5' -56.9 NC_001347.2 + 228286 0.66 0.909856
Target:  5'- -aGCGGCgaGCGGCACGgagaCGgaggccGCCGGCGg -3'
miRNA:   3'- gaCGUCGa-CGCUGUGC----GCa-----UGGUCGU- -5'
1883 5' -56.9 NC_001347.2 + 227812 0.66 0.909856
Target:  5'- cCUGCAcccgcgcgccgcGCUGUgGGCGCGCGaGCC-GCAc -3'
miRNA:   3'- -GACGU------------CGACG-CUGUGCGCaUGGuCGU- -5'
1883 5' -56.9 NC_001347.2 + 135262 0.66 0.909856
Target:  5'- -aGCAGC-GCGuGCACGCGUagaGCgAGUg -3'
miRNA:   3'- gaCGUCGaCGC-UGUGCGCA---UGgUCGu -5'
1883 5' -56.9 NC_001347.2 + 147971 0.66 0.909856
Target:  5'- -aGC-GCUGCGGuuucCACGCccaGUGCCGGUg -3'
miRNA:   3'- gaCGuCGACGCU----GUGCG---CAUGGUCGu -5'
1883 5' -56.9 NC_001347.2 + 89388 0.66 0.909856
Target:  5'- -aGCAGCcGCGACGaggugGCGggcGCCAcGCAg -3'
miRNA:   3'- gaCGUCGaCGCUGUg----CGCa--UGGU-CGU- -5'
1883 5' -56.9 NC_001347.2 + 69563 0.66 0.909856
Target:  5'- cCUGCuGCgUGuCGAUGCGCugGUGCCAGgCGg -3'
miRNA:   3'- -GACGuCG-AC-GCUGUGCG--CAUGGUC-GU- -5'
1883 5' -56.9 NC_001347.2 + 36271 0.66 0.908075
Target:  5'- gUGCGGCUggcgcGCGACcucaggggcuucguGCGCGUgggGCUGGCGc -3'
miRNA:   3'- gACGUCGA-----CGCUG--------------UGCGCA---UGGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.