Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1883 | 5' | -56.9 | NC_001347.2 | + | 166887 | 0.66 | 0.903839 |
Target: 5'- gUGCAGCUGCaGAUcaGCGCcucGUG-CGGCAa -3' miRNA: 3'- gACGUCGACG-CUG--UGCG---CAUgGUCGU- -5' |
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1883 | 5' | -56.9 | NC_001347.2 | + | 113908 | 0.66 | 0.9122 |
Target: 5'- aUGCAGCgaGCGACACGUGgUggaaauuacaacaccGCCAcGCu -3' miRNA: 3'- gACGUCGa-CGCUGUGCGC-A---------------UGGU-CGu -5' |
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1883 | 5' | -56.9 | NC_001347.2 | + | 69563 | 0.66 | 0.909856 |
Target: 5'- cCUGCuGCgUGuCGAUGCGCugGUGCCAGgCGg -3' miRNA: 3'- -GACGuCG-AC-GCUGUGCG--CAUGGUC-GU- -5' |
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1883 | 5' | -56.9 | NC_001347.2 | + | 89388 | 0.66 | 0.909856 |
Target: 5'- -aGCAGCcGCGACGaggugGCGggcGCCAcGCAg -3' miRNA: 3'- gaCGUCGaCGCUGUg----CGCa--UGGU-CGU- -5' |
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1883 | 5' | -56.9 | NC_001347.2 | + | 147971 | 0.66 | 0.909856 |
Target: 5'- -aGC-GCUGCGGuuucCACGCccaGUGCCGGUg -3' miRNA: 3'- gaCGuCGACGCU----GUGCG---CAUGGUCGu -5' |
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1883 | 5' | -56.9 | NC_001347.2 | + | 135262 | 0.66 | 0.909856 |
Target: 5'- -aGCAGC-GCGuGCACGCGUagaGCgAGUg -3' miRNA: 3'- gaCGUCGaCGC-UGUGCGCA---UGgUCGu -5' |
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1883 | 5' | -56.9 | NC_001347.2 | + | 227812 | 0.66 | 0.909856 |
Target: 5'- cCUGCAcccgcgcgccgcGCUGUgGGCGCGCGaGCC-GCAc -3' miRNA: 3'- -GACGU------------CGACG-CUGUGCGCaUGGuCGU- -5' |
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1883 | 5' | -56.9 | NC_001347.2 | + | 36271 | 0.66 | 0.908075 |
Target: 5'- gUGCGGCUggcgcGCGACcucaggggcuucguGCGCGUgggGCUGGCGc -3' miRNA: 3'- gACGUCGA-----CGCUG--------------UGCGCA---UGGUCGU- -5' |
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1883 | 5' | -56.9 | NC_001347.2 | + | 228286 | 0.66 | 0.909856 |
Target: 5'- -aGCGGCgaGCGGCACGgagaCGgaggccGCCGGCGg -3' miRNA: 3'- gaCGUCGa-CGCUGUGC----GCa-----UGGUCGU- -5' |
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1883 | 5' | -56.9 | NC_001347.2 | + | 163378 | 0.66 | 0.917901 |
Target: 5'- -aGCAGCUgguguuucgauugcgGCGGCaacggGCGCGacACCGGCGa -3' miRNA: 3'- gaCGUCGA---------------CGCUG-----UGCGCa-UGGUCGU- -5' |
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1883 | 5' | -56.9 | NC_001347.2 | + | 73490 | 0.66 | 0.915648 |
Target: 5'- -gGCGGCaGCGGCA-GCGgcggGCCAGg- -3' miRNA: 3'- gaCGUCGaCGCUGUgCGCa---UGGUCgu -5' |
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1883 | 5' | -56.9 | NC_001347.2 | + | 131153 | 0.66 | 0.919567 |
Target: 5'- uUGggaAGCcGCGGCGCGCGUACgccgagacccgacgCGGCGa -3' miRNA: 3'- gACg--UCGaCGCUGUGCGCAUG--------------GUCGU- -5' |
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1883 | 5' | -56.9 | NC_001347.2 | + | 136576 | 0.66 | 0.926548 |
Target: 5'- -cGCAGCUGCaccaacucauGAC-CGCGUAUCuuggaaGGCGg -3' miRNA: 3'- gaCGUCGACG----------CUGuGCGCAUGG------UCGU- -5' |
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1883 | 5' | -56.9 | NC_001347.2 | + | 229665 | 0.66 | 0.926548 |
Target: 5'- -gGCGGCUGUGcgcuccagugguACGCGCcUGCCGcGCGu -3' miRNA: 3'- gaCGUCGACGC------------UGUGCGcAUGGU-CGU- -5' |
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1883 | 5' | -56.9 | NC_001347.2 | + | 90085 | 0.66 | 0.924971 |
Target: 5'- -cGCAGCauuuggcguuggugUGUGGCACGUGUcCgCAGCu -3' miRNA: 3'- gaCGUCG--------------ACGCUGUGCGCAuG-GUCGu -5' |
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1883 | 5' | -56.9 | NC_001347.2 | + | 73229 | 0.66 | 0.926025 |
Target: 5'- gCUGguGCUGgcucugcUGugGCGCGgucaugGCCAGUc -3' miRNA: 3'- -GACguCGAC-------GCugUGCGCa-----UGGUCGu -5' |
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1883 | 5' | -56.9 | NC_001347.2 | + | 143405 | 0.66 | 0.921212 |
Target: 5'- -cGCAGCgugUGCGACaccaGCGCGgcGCCAuGCu -3' miRNA: 3'- gaCGUCG---ACGCUG----UGCGCa-UGGU-CGu -5' |
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1883 | 5' | -56.9 | NC_001347.2 | + | 45402 | 0.66 | 0.921212 |
Target: 5'- -cGCAGCUG-GGC-CGUGaaaACCAGCu -3' miRNA: 3'- gaCGUCGACgCUGuGCGCa--UGGUCGu -5' |
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1883 | 5' | -56.9 | NC_001347.2 | + | 229268 | 0.66 | 0.921212 |
Target: 5'- gCUGCGGCUaCGACgACGCcggGCCAcgGCGu -3' miRNA: 3'- -GACGUCGAcGCUG-UGCGca-UGGU--CGU- -5' |
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1883 | 5' | -56.9 | NC_001347.2 | + | 228565 | 0.66 | 0.921212 |
Target: 5'- -gGgAGCUGCGcCG-GCGguggGCCGGCAc -3' miRNA: 3'- gaCgUCGACGCuGUgCGCa---UGGUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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